Wall clock time and date at job start Mon Mar 30 2020 03:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48508 * 109.46890 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47034 * 299.99451 * 3 2 1 6 6 H 1.48496 * 109.47367 * 60.00205 * 3 2 1 7 7 C 1.37877 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99489 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47570 * 60.00112 * 9 7 2 11 11 N 1.46900 * 109.47301 * 299.99676 * 9 7 2 12 12 C 1.50704 * 109.46772 * 180.02562 * 9 7 2 13 13 N 1.34046 * 125.98742 * 74.97481 * 12 9 7 14 14 C 1.30880 * 109.31214 * 179.97438 * 13 12 9 15 15 N 1.34935 * 108.62589 * 0.18504 * 14 13 12 16 16 C 1.34695 * 125.98677 * 255.01613 * 12 9 7 17 17 Cl 1.73604 * 126.58754 * 359.93573 * 16 12 9 18 18 C 1.46995 * 111.16518 * 179.70748 * 15 14 13 19 19 C 1.54380 * 105.53914 * 17.10830 * 18 15 14 20 20 C 1.51566 * 141.45125 * 180.16449 * 14 13 12 21 21 H 0.97003 * 119.99808 * 0.02562 * 1 2 3 22 22 H 1.00902 * 110.99626 * 300.00290 * 11 9 7 23 23 H 1.00894 * 110.99998 * 63.95927 * 11 9 7 24 24 H 1.09001 * 110.23763 * 136.14562 * 18 15 14 25 25 H 1.09003 * 110.23232 * 258.11424 * 18 15 14 26 26 H 1.09002 * 110.96693 * 216.14333 * 19 18 15 27 27 H 1.08991 * 110.95251 * 92.39771 * 19 18 15 28 28 H 1.09004 * 110.47429 * 282.16544 * 20 14 13 29 29 H 1.08998 * 110.48088 * 44.78282 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4060 -2.5767 1.1997 12 6 2.2303 -3.6446 0.0018 13 7 2.9550 -4.0601 1.0501 14 6 3.6956 -5.0768 0.6886 15 7 3.4635 -5.3371 -0.6149 16 6 2.5312 -4.4297 -1.0504 17 17 1.8680 -4.3145 -2.6507 18 6 4.2754 -6.4697 -1.0827 19 6 4.7496 -7.1944 0.1953 20 6 4.7182 -6.0525 1.2359 21 1 -0.4850 0.8401 -0.0004 22 1 0.9638 -2.5251 2.0389 23 1 -0.3013 -1.8572 1.1908 24 1 3.6710 -7.1398 -1.6941 25 1 5.1326 -6.1096 -1.6516 26 1 5.7609 -7.5818 0.0715 27 1 4.0591 -7.9917 0.4702 28 1 5.6966 -5.5776 1.3105 29 1 4.4021 -6.4310 2.2080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260929366.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:49 Heat of formation + Delta-G solvation = 60.388661 kcal Electronic energy + Delta-G solvation = -15164.991981 eV Core-core repulsion = 12536.006436 eV Total energy + Delta-G solvation = -2628.985545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.068 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.93320 -36.58054 -35.96193 -34.11405 -31.44391 -30.91099 -28.02322 -26.92037 -25.63187 -22.82784 -21.26569 -19.73843 -19.18435 -16.81994 -16.26008 -16.04511 -14.82237 -14.28875 -14.06719 -13.67975 -13.30696 -13.07156 -12.70497 -12.50798 -11.87531 -11.68375 -11.53704 -11.17714 -10.94051 -10.90762 -10.75782 -10.62553 -9.93848 -9.75373 -9.14956 -8.95150 -8.51011 -7.50870 -6.97804 -5.94322 -4.08977 2.26791 2.40596 3.26272 3.30807 3.38358 3.44165 3.78954 4.04953 4.45983 4.49699 4.62262 4.79728 5.22930 5.27794 5.38268 5.46226 5.69547 5.83909 5.94243 6.20604 6.62213 6.89961 7.25374 7.35362 7.82209 7.89473 8.24113 8.72758 8.85371 9.12503 9.34472 9.61617 11.02957 Molecular weight = 241.07amu Principal moments of inertia in cm(-1) A = 0.029772 B = 0.007733 C = 0.007113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.240012 B = 3620.076781 C = 3935.265679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.065 3.935 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.283 3.717 10 H 0.056 0.944 11 N -0.847 5.847 12 C 0.112 3.888 13 N -0.454 5.454 14 C 0.182 3.818 15 N -0.487 5.487 16 C 0.009 3.991 17 Cl -0.023 7.023 18 C 0.105 3.895 19 C -0.128 4.128 20 C -0.035 4.035 21 H 0.264 0.736 22 H 0.321 0.679 23 H 0.354 0.646 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.728 -13.490 -1.692 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.172 3.828 10 H 0.074 0.926 11 N -0.377 5.377 12 C -0.020 4.020 13 N -0.174 5.174 14 C -0.080 4.080 15 N -0.177 5.177 16 C -0.127 4.127 17 Cl 0.005 6.995 18 C -0.017 4.017 19 C -0.166 4.166 20 C -0.074 4.074 21 H 0.073 0.927 22 H 0.130 0.870 23 H 0.170 0.830 24 H 0.103 0.897 25 H 0.102 0.898 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.250 -13.818 -1.589 16.172 hybrid contribution 0.881 1.578 -1.042 2.087 sum 9.131 -12.240 -2.631 15.496 Atomic orbital electron populations 1.69760 1.05728 1.26876 1.51219 1.24968 0.94926 0.99104 0.94703 0.86465 0.80141 0.83425 0.77513 1.19885 1.20998 1.20977 1.21785 0.93609 0.90911 1.50674 0.92815 1.17441 0.87395 0.85744 0.92235 0.92610 1.59329 1.18405 1.55693 1.04268 1.21377 0.98352 0.96894 0.85344 1.69983 1.08226 1.09499 1.29651 1.24203 1.01955 0.98823 0.82982 1.46023 1.32549 1.26250 1.12842 1.21148 1.02142 0.99482 0.89878 1.98320 1.83310 1.97421 1.20415 1.22262 0.94700 0.86671 0.98095 1.22703 1.03102 0.97657 0.93123 1.20565 0.95936 0.91613 0.99324 0.92655 0.86976 0.83034 0.89695 0.89794 0.88387 0.89572 0.88899 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.54 55.43 0.64 -24.95 15 2 C 0.06 1.82 5.38 -17.82 -0.10 1.72 15 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 7 C -0.53 -15.23 8.71 -34.44 -0.30 -15.53 15 8 H 0.05 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.28 7.66 3.13 -70.01 -0.22 7.44 15 10 H 0.06 1.61 7.54 -51.93 -0.39 1.22 15 11 N -0.85 -22.28 9.18 -6.65 -0.06 -22.34 15 12 C 0.11 2.75 5.85 -82.88 -0.48 2.26 15 13 N -0.45 -10.50 11.13 -6.76 -0.08 -10.58 15 14 C 0.18 3.33 8.58 -154.77 -1.33 2.00 15 15 N -0.49 -8.56 3.61 -108.82 -0.39 -8.95 15 16 C 0.01 0.20 7.85 -16.41 -0.13 0.07 15 17 Cl -0.02 -0.44 28.64 -51.86 -1.49 -1.92 15 18 C 0.10 1.18 7.78 -3.05 -0.02 1.16 15 19 C -0.13 -1.04 7.17 -25.20 -0.18 -1.22 15 20 C -0.04 -0.40 6.86 -26.65 -0.18 -0.58 15 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 22 H 0.32 8.38 8.87 -39.29 -0.35 8.03 15 23 H 0.35 9.64 7.08 -39.29 -0.28 9.36 15 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 15 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 15 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 15 LS Contribution 264.66 15.07 3.99 3.99 Total: -1.00 -32.53 264.66 -8.45 -40.98 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.10 Total: 9.53 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.94 Total: -2.68 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: 0.11 Total: -66.81 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.49 Total: -1.92 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.53 -8.45 -40.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929366.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.368 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds