Wall clock time and date at job start Mon Mar 30 2020 03:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86793 * 120.00312 * 2 1 4 4 H 1.48498 * 109.47283 * 269.99763 * 3 2 1 5 5 H 1.48496 * 109.47056 * 30.00133 * 3 2 1 6 6 H 1.48506 * 109.47025 * 149.99948 * 3 2 1 7 7 C 1.38657 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00544 * 179.97438 * 7 2 1 9 9 O 1.34827 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.35769 * 117.00035 * 185.06243 * 9 7 2 11 11 C 1.38867 * 120.06985 * 354.40334 * 10 9 7 12 12 C 1.38100 * 119.93946 * 179.97438 * 11 10 9 13 13 C 1.38313 * 120.09242 * 0.02828 * 12 11 10 14 14 C 1.38272 * 120.15163 * 359.95059 * 13 12 11 15 15 C 1.50706 * 119.97341 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47165 * 265.00150 * 15 14 13 17 17 N 1.46895 * 109.46973 * 180.02562 * 16 15 14 18 18 C 1.38225 * 120.05683 * 0.27763 * 14 13 12 19 19 Cl 1.73590 * 120.04870 * 179.72623 * 18 14 13 20 20 H 0.97007 * 120.00010 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.02956 * 359.97438 * 11 10 9 22 22 H 1.08002 * 119.95231 * 179.97438 * 12 11 10 23 23 H 1.08004 * 119.92620 * 179.97438 * 13 12 11 24 24 H 1.09000 * 109.46960 * 24.99989 * 15 14 13 25 25 H 1.09004 * 109.46858 * 144.99670 * 15 14 13 26 26 H 1.09000 * 109.46590 * 300.00053 * 16 15 14 27 27 H 1.08995 * 109.47084 * 59.99888 * 16 15 14 28 28 H 1.00899 * 110.99932 * 179.97438 * 17 16 15 29 29 H 1.00899 * 110.99830 * 303.94754 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3346 -2.3684 0.0016 10 6 2.0699 -3.5047 0.1088 11 6 3.4570 -3.4398 0.0941 12 6 4.2023 -4.5973 0.2039 13 6 3.5691 -5.8207 0.3278 14 6 2.1882 -5.8896 0.3433 15 6 1.5024 -7.2247 0.4792 16 6 1.1494 -7.7604 -0.9098 17 7 0.4805 -9.0615 -0.7774 18 6 1.4361 -4.7355 0.2291 19 17 -0.2976 -4.8230 0.2415 20 1 -0.4850 0.8401 0.0004 21 1 3.9524 -2.4851 -0.0031 22 1 5.2811 -4.5471 0.1920 23 1 4.1546 -6.7242 0.4131 24 1 2.1692 -7.9263 0.9805 25 1 0.5912 -7.1071 1.0657 26 1 0.4827 -7.0588 -1.4111 27 1 2.0606 -7.8780 -1.4963 28 1 0.2366 -9.4364 -1.6818 29 1 1.0525 -9.7110 -0.2587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328231323.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:57 Heat of formation + Delta-G solvation = -40.149335 kcal Electronic energy + Delta-G solvation = -14775.869875 eV Core-core repulsion = 12110.231924 eV Total energy + Delta-G solvation = -2665.637950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 241.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90589 -38.74571 -37.08287 -36.18427 -34.30905 -32.59194 -30.74335 -28.39627 -27.24452 -23.86703 -23.24003 -22.09832 -19.54464 -18.90372 -17.15122 -16.89346 -16.51933 -16.19647 -15.92334 -15.69978 -15.01823 -14.75126 -14.40893 -14.01500 -13.65667 -13.50811 -12.89849 -12.67977 -12.57683 -12.44428 -12.21600 -12.13072 -11.87708 -11.59755 -11.20168 -10.80786 -9.61156 -9.50780 -9.01481 -8.46689 -6.15435 0.35073 0.60929 1.35357 1.44762 1.49520 1.53263 2.16554 2.72995 3.09095 3.30019 3.65690 4.02644 4.14862 4.26628 4.33503 4.45225 4.49202 4.64854 4.77306 4.97703 5.07458 5.14369 5.21083 5.49100 5.58883 5.65536 5.96912 6.07627 6.24000 6.67309 6.96236 7.72699 8.75184 Molecular weight = 241.06amu Principal moments of inertia in cm(-1) A = 0.037744 B = 0.006767 C = 0.005885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.670122 B = 4136.983580 C = 4756.577729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.251 1.251 7 C -0.418 4.418 8 H 0.106 0.894 9 O -0.210 6.210 10 C 0.119 3.881 11 C -0.241 4.241 12 C -0.060 4.060 13 C -0.179 4.179 14 C -0.034 4.034 15 C -0.072 4.072 16 C 0.074 3.926 17 N -0.854 5.854 18 C -0.123 4.123 19 Cl -0.084 7.084 20 H 0.272 0.728 21 H 0.129 0.871 22 H 0.156 0.844 23 H 0.161 0.839 24 H 0.100 0.900 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.039 0.961 28 H 0.351 0.649 29 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.055 -12.869 -0.460 15.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.494 4.494 8 H 0.123 0.877 9 O -0.116 6.116 10 C 0.067 3.933 11 C -0.260 4.260 12 C -0.078 4.078 13 C -0.197 4.197 14 C -0.035 4.035 15 C -0.110 4.110 16 C -0.057 4.057 17 N -0.386 5.386 18 C -0.150 4.150 19 Cl -0.055 7.055 20 H 0.081 0.919 21 H 0.147 0.853 22 H 0.174 0.826 23 H 0.178 0.822 24 H 0.118 0.882 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.165 0.835 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.910 -12.294 -0.086 14.103 hybrid contribution 0.509 0.803 -0.594 1.121 sum 7.419 -11.491 -0.681 13.695 Atomic orbital electron populations 1.70214 1.08067 1.28790 1.47984 1.26585 0.96780 1.02696 0.95680 0.84591 0.77876 0.74548 0.79224 1.18830 1.19828 1.17439 1.21887 0.92671 0.81320 1.53518 0.87722 1.84033 1.35217 1.12129 1.80176 1.19639 0.91752 0.87247 0.94686 1.21301 0.91940 1.00963 1.11835 1.21285 1.00813 0.91005 0.94668 1.21019 0.92163 0.98815 1.07735 1.19660 0.93955 0.92842 0.97079 1.20550 1.00532 0.91709 0.98179 1.21551 0.96920 0.91633 0.95549 1.58594 1.50150 1.05185 1.24697 1.20242 0.84103 0.92895 1.17795 1.98287 1.11397 1.98448 1.97392 0.91855 0.85349 0.82602 0.82182 0.88191 0.91265 0.93103 0.94326 0.83532 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.10 13.67 21.61 0.30 -55.80 15 2 C -0.02 -1.07 5.49 84.83 0.47 -0.60 15 3 Si 1.02 42.42 29.55 68.60 2.03 44.45 15 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 15 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 6 H -0.25 -9.61 7.11 99.48 0.71 -8.91 15 7 C -0.42 -23.99 9.49 67.92 0.64 -23.35 15 8 H 0.11 5.43 5.20 -2.91 -0.02 5.42 15 9 O -0.21 -12.51 9.22 -22.93 -0.21 -12.72 15 10 C 0.12 5.89 6.64 22.60 0.15 6.04 15 11 C -0.24 -10.04 9.17 22.39 0.21 -9.83 15 12 C -0.06 -1.87 10.04 22.25 0.22 -1.65 15 13 C -0.18 -5.12 9.68 22.30 0.22 -4.90 15 14 C -0.03 -1.14 5.13 -19.86 -0.10 -1.24 15 15 C -0.07 -1.93 5.11 29.85 0.15 -1.78 15 16 C 0.07 1.84 6.77 86.30 0.58 2.42 15 17 N -0.85 -16.87 9.62 -186.73 -1.80 -18.67 15 18 C -0.12 -5.34 6.33 22.44 0.14 -5.20 15 19 Cl -0.08 -3.70 26.68 -2.72 -0.07 -3.77 15 20 H 0.27 15.36 8.31 -92.70 -0.77 14.59 15 21 H 0.13 5.36 5.64 -2.91 -0.02 5.35 15 22 H 0.16 3.57 8.06 -2.91 -0.02 3.55 15 23 H 0.16 3.18 8.06 -2.91 -0.02 3.16 15 24 H 0.10 2.03 8.05 -2.39 -0.02 2.01 15 25 H 0.07 2.10 7.13 -2.38 -0.02 2.08 15 26 H 0.05 1.54 7.86 -2.39 -0.02 1.52 15 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 15 28 H 0.35 5.70 9.08 -89.69 -0.81 4.89 15 29 H 0.35 5.26 8.99 -89.70 -0.81 4.45 15 Total: -1.00 -70.24 268.44 2.50 -67.74 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -0.42 Total: 18.86 kcal Atomic # 6 Polarization: -42.77 SS G_CDS: 2.68 Total: -40.09 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.50 Total: -74.47 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.21 Total: -12.72 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 17 Polarization: -3.70 SS G_CDS: -0.07 Total: -3.77 kcal Total: -70.24 2.50 -67.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328231323.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.592 kcal (2) G-P(sol) polarization free energy of solvation -70.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds