Wall clock time and date at job start Mon Mar 30 2020 03:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46739 * 2 1 4 4 N 1.46496 * 109.47385 * 120.00210 * 2 1 3 5 5 C 1.36818 * 120.00066 * 269.06116 * 4 2 1 6 6 H 1.08002 * 119.99995 * 42.59673 * 5 4 2 7 7 C 1.39059 * 119.99870 * 222.59484 * 5 4 2 8 8 N 1.31354 * 120.00389 * 14.73560 * 7 5 4 9 9 Si 1.86807 * 119.99890 * 194.73424 * 7 5 4 10 10 H 1.48493 * 109.47044 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47267 * 120.00335 * 9 7 5 12 12 H 1.48504 * 109.46807 * 240.00237 * 9 7 5 13 13 C 1.34782 * 120.00015 * 89.05898 * 4 2 1 14 14 O 1.21625 * 119.99936 * 174.62803 * 13 4 2 15 15 C 1.47447 * 120.00018 * 354.90776 * 13 4 2 16 16 C 1.33450 * 126.59512 * 171.50979 * 15 13 4 17 17 C 1.49593 * 116.37874 * 179.76735 * 16 15 13 18 18 N 1.48238 * 110.79577 * 19.81072 * 17 16 15 19 19 S 1.77523 * 126.59348 * 351.20127 * 15 13 4 20 20 H 1.09000 * 109.47250 * 305.67547 * 1 2 3 21 21 H 1.08997 * 109.47491 * 65.68068 * 1 2 3 22 22 H 1.09006 * 109.47113 * 185.68589 * 1 2 3 23 23 H 1.09005 * 109.47069 * 240.00201 * 2 1 3 24 24 H 1.09005 * 109.46893 * 182.95320 * 3 2 1 25 25 H 1.08999 * 109.47516 * 302.94764 * 3 2 1 26 26 H 1.08994 * 109.47292 * 62.95619 * 3 2 1 27 27 H 0.96995 * 120.00076 * 180.02562 * 8 7 5 28 28 H 1.08005 * 121.81243 * 359.74641 * 16 15 13 29 29 H 1.09002 * 109.22287 * 140.16507 * 17 16 15 30 30 H 1.09000 * 109.22195 * 259.45875 * 17 16 15 31 31 H 1.00900 * 111.00142 * 214.31547 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.2648 0.0161 2.3414 6 1 1.5718 0.7786 2.6651 7 6 3.4074 -0.2475 3.0888 8 7 4.3861 -0.9510 2.5666 9 14 3.5507 0.3990 4.8356 10 1 2.3226 1.1570 5.1851 11 1 3.7134 -0.7407 5.7735 12 1 4.7305 1.2953 4.9364 13 6 2.2250 -2.0222 1.1683 14 8 2.7220 -2.5807 2.1276 15 6 1.8541 -2.8010 -0.0276 16 6 2.1398 -4.0833 -0.2620 17 6 1.6445 -4.6489 -1.5553 18 7 1.3453 -3.5664 -2.5229 19 16 0.9351 -2.2152 -1.4289 20 1 -0.3634 0.5993 0.8348 21 1 -0.3634 0.4232 -0.9364 22 1 -0.3634 -1.0227 0.1018 23 1 1.8933 -0.5138 -0.8900 24 1 3.1287 1.4430 -0.0529 25 1 1.6341 1.9714 -0.8624 26 1 1.7205 1.9408 0.9152 27 1 5.1829 -1.1352 3.0881 28 1 2.6986 -4.6803 0.4435 29 1 2.4068 -5.3050 -1.9754 30 1 0.7384 -5.2260 -1.3710 31 1 0.5576 -3.8091 -3.1049 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725632501.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:56 Heat of formation + Delta-G solvation = 23.708848 kcal Electronic energy + Delta-G solvation = -16111.544454 eV Core-core repulsion = 13521.126492 eV Total energy + Delta-G solvation = -2590.417962 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.57891 -36.53488 -34.98498 -32.55565 -30.82284 -29.94580 -26.76680 -25.86995 -24.41963 -21.37313 -20.44256 -18.90996 -17.83539 -15.92260 -15.53599 -15.45440 -14.77675 -14.60994 -13.75053 -13.62822 -13.24664 -12.95395 -12.34560 -12.20331 -11.95406 -11.64465 -11.43404 -11.04817 -11.02488 -10.81606 -10.55761 -10.45762 -10.25625 -10.15514 -9.53261 -9.12397 -8.85701 -8.16234 -7.13990 -6.70318 -6.08480 -3.87082 1.82988 2.01750 2.39399 3.30051 3.37723 3.40095 4.23263 4.57035 4.70672 4.85736 5.21078 5.26759 5.47096 5.60577 5.72142 5.91369 5.98864 6.18724 6.32054 6.38863 6.49046 6.55149 6.60988 6.68955 6.74006 7.01886 7.14129 7.58630 8.23761 9.00155 9.12611 9.60610 10.25334 10.95889 Molecular weight = 242.08amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.009582 C = 0.007907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.036468 B = 2921.510467 C = 3540.221017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 C -0.132 4.132 4 N -0.429 5.429 5 C -0.332 4.332 6 H 0.084 0.916 7 C 0.060 3.940 8 N -0.811 5.811 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.285 1.285 13 C 0.515 3.485 14 O -0.513 6.513 15 C -0.109 4.109 16 C -0.163 4.163 17 C 0.056 3.944 18 N -0.627 5.627 19 S 0.028 5.972 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.264 0.736 28 H 0.152 0.848 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -1.737 -7.969 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 C -0.190 4.190 4 N -0.149 5.149 5 C -0.459 4.459 6 H 0.102 0.898 7 C -0.152 4.152 8 N -0.444 5.444 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.211 1.211 13 C 0.300 3.700 14 O -0.391 6.391 15 C -0.225 4.225 16 C -0.196 4.196 17 C -0.075 4.075 18 N -0.346 5.346 19 S 0.159 5.841 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.110 0.890 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.169 0.831 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.205 -1.100 -8.138 10.293 hybrid contribution 0.026 -1.138 1.327 1.748 sum -6.179 -2.238 -6.811 9.465 Atomic orbital electron populations 1.22300 0.96977 1.01510 1.01142 1.21717 0.93353 0.95059 0.90615 1.21784 1.01520 0.94865 1.00794 1.43209 1.58065 1.03880 1.09794 1.19008 1.05894 1.20884 1.00104 0.89801 1.25305 0.94366 0.96122 0.99391 1.69915 1.04755 1.33367 1.36404 0.86146 0.77954 0.78288 0.83764 1.19486 1.20723 1.21090 1.16849 0.85660 0.82285 0.85184 1.90662 1.43750 1.69178 1.35531 1.24872 1.01703 0.97819 0.98153 1.23503 1.02716 0.95585 0.97777 1.21630 1.01282 0.94605 0.89973 1.67297 1.41500 1.08008 1.17824 1.86726 1.62567 1.27678 1.07095 0.92469 0.92543 0.92421 0.88951 0.92410 0.93687 0.91693 0.92607 0.83080 0.88305 0.92068 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.11 37.16 0.30 -2.50 16 2 C 0.10 2.05 2.55 -67.93 -0.17 1.88 16 3 C -0.13 -2.51 8.64 37.16 0.32 -2.19 16 4 N -0.43 -10.91 2.48 -108.94 -0.27 -11.18 16 5 C -0.33 -8.96 7.75 -15.02 -0.12 -9.07 16 6 H 0.08 2.17 7.35 -52.49 -0.39 1.78 16 7 C 0.06 1.67 4.52 -17.45 -0.08 1.59 16 8 N -0.81 -24.14 11.11 55.50 0.62 -23.53 16 9 Si 0.91 21.57 29.58 -169.99 -5.03 16.54 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.51 13.69 7.05 -12.51 -0.09 13.60 16 14 O -0.51 -15.55 14.02 5.26 0.07 -15.47 16 15 C -0.11 -2.37 6.19 -37.51 -0.23 -2.60 16 16 C -0.16 -3.09 10.21 -36.51 -0.37 -3.46 16 17 C 0.06 0.80 7.02 -4.77 -0.03 0.77 16 18 N -0.63 -9.29 8.34 -11.04 -0.09 -9.38 16 19 S 0.03 0.49 16.47 -107.50 -1.77 -1.28 16 20 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.06 1.05 6.29 -48.80 -0.31 0.74 16 23 H 0.09 1.92 4.70 -25.73 -0.12 1.80 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.26 6.90 -51.93 -0.36 0.90 16 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.15 2.88 8.05 -52.48 -0.42 2.46 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.35 4.10 9.00 -36.88 -0.33 3.76 16 LS Contribution 264.77 15.07 3.99 3.99 Total: -1.00 -32.30 264.77 -6.55 -38.85 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.60 Total: 3.45 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.47 Total: -1.98 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.25 Total: -44.09 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.07 Total: -15.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -1.77 Total: -1.28 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.30 -6.55 -38.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725632501.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.556 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds