Wall clock time and date at job start Mon Mar 30 2020 03:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.50701 * 109.47120 * 119.99807 * 2 1 3 5 5 H 1.08002 * 119.99562 * 120.00360 * 4 2 1 6 6 C 1.37873 * 120.00300 * 300.00215 * 4 2 1 7 7 N 1.31517 * 120.00139 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00039 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47053 * 60.00299 * 8 6 4 10 10 H 1.48504 * 109.47222 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47147 * 300.00021 * 8 6 4 12 12 N 1.46495 * 109.47540 * 240.00208 * 2 1 3 13 13 C 1.46506 * 120.00014 * 300.00000 * 12 2 1 14 14 C 1.34774 * 120.00128 * 119.99177 * 12 2 1 15 15 O 1.21277 * 119.99878 * 0.02562 * 14 12 2 16 16 C 1.50703 * 120.00048 * 179.97438 * 14 12 2 17 17 H 1.09001 * 109.22575 * 39.45126 * 16 14 12 18 18 C 1.49579 * 109.24839 * 280.00796 * 16 14 12 19 19 C 1.31736 * 116.78499 * 220.26420 * 18 16 14 20 20 S 1.77532 * 106.95160 * 359.88408 * 19 18 16 21 21 N 1.48310 * 109.24214 * 158.79893 * 16 14 12 22 22 H 1.09001 * 109.46399 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47113 * 299.99323 * 1 2 3 24 24 H 1.08994 * 109.47305 * 60.00230 * 1 2 3 25 25 H 0.96994 * 120.00208 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.46624 * 269.99694 * 13 12 2 27 27 H 1.08996 * 109.46686 * 29.99515 * 13 12 2 28 28 H 1.08998 * 109.46960 * 149.99576 * 13 12 2 29 29 H 1.08002 * 121.60461 * 39.98453 * 18 16 14 30 30 H 1.07997 * 126.52760 * 179.97438 * 19 18 16 31 31 H 1.00901 * 111.00061 * 29.66017 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6035 8 14 2.3214 -1.1204 4.0080 9 1 3.8064 -1.1209 4.0082 10 1 1.8260 -0.4207 5.2205 11 1 1.8259 -2.5203 4.0077 12 7 2.0184 -0.6905 -1.1961 13 6 1.6646 -2.0932 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0864 1.1256 -1.8912 16 6 3.2961 -0.7460 -3.3135 17 1 2.5075 -1.3891 -3.7041 18 6 4.4805 -1.5838 -2.9494 19 6 5.4802 -1.6032 -3.8072 20 16 5.0157 -0.5606 -5.1670 21 7 3.6607 0.2575 -4.3428 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 0.7087 1.1612 3.4844 26 1 2.4159 -2.7376 -0.9717 27 1 0.6906 -2.3002 -0.9847 28 1 1.6239 -2.2851 -2.5002 29 1 4.5164 -2.1422 -2.0257 30 1 6.4055 -2.1504 -3.7037 31 1 3.9648 1.1196 -3.9156 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725633308.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:28 Heat of formation + Delta-G solvation = -13.526460 kcal Electronic energy + Delta-G solvation = -15693.281668 eV Core-core repulsion = 13101.249062 eV Total energy + Delta-G solvation = -2592.032606 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34496 -37.90360 -37.09684 -34.83645 -32.31788 -31.57652 -27.86177 -27.46319 -27.18947 -23.18043 -21.49087 -20.43526 -19.06403 -18.52089 -17.97267 -17.48711 -16.59918 -16.24256 -15.90479 -15.51446 -14.71796 -14.34430 -14.26322 -14.18981 -13.54349 -13.47558 -13.02503 -12.95449 -12.75844 -12.67293 -12.22077 -12.18879 -12.06701 -11.61807 -11.23016 -11.12675 -10.70640 -10.52173 -9.46873 -8.62210 -8.16909 -6.33978 0.46463 0.65494 0.86646 1.41442 1.43324 1.50664 1.58799 2.18373 2.43204 3.08191 3.11665 3.46413 3.90018 3.93896 4.39922 4.50292 4.65602 4.73959 4.84874 4.85714 4.97728 5.02097 5.03244 5.18074 5.41307 5.52453 5.61877 5.96514 6.11230 6.63969 6.72512 7.12595 7.38561 8.87479 Molecular weight = 242.08amu Principal moments of inertia in cm(-1) A = 0.038540 B = 0.006318 C = 0.005980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.336158 B = 4430.396105 C = 4681.040636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.261 3.739 3 H 0.009 0.991 4 C -0.539 4.539 5 H 0.065 0.935 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.965 3.035 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.585 5.585 13 C 0.075 3.925 14 C 0.502 3.498 15 O -0.595 6.595 16 C 0.073 3.927 17 H 0.157 0.843 18 C -0.197 4.197 19 C -0.132 4.132 20 S 0.005 5.995 21 N -0.572 5.572 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.019 0.981 25 H 0.265 0.735 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.162 0.838 30 H 0.209 0.791 31 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 -9.564 -10.787 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.159 3.841 3 H 0.027 0.973 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.185 1.185 12 N -0.314 5.314 13 C -0.067 4.067 14 C 0.287 3.713 15 O -0.477 6.477 16 C -0.041 4.041 17 H 0.173 0.827 18 C -0.229 4.229 19 C -0.263 4.263 20 S 0.133 5.867 21 N -0.295 5.295 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.039 0.961 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.179 0.821 30 H 0.226 0.774 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.986 -8.622 -12.142 15.705 hybrid contribution 0.396 0.040 2.965 2.992 sum 5.382 -8.583 -9.177 13.669 Atomic orbital electron populations 1.21900 0.96962 1.00398 1.00051 1.18611 0.91772 0.92231 0.81464 0.97279 1.21521 1.32126 1.13197 0.90874 0.91709 1.25745 0.95028 0.95608 1.02091 1.70014 1.37184 1.23899 1.24568 0.85502 0.78382 0.79033 0.78059 1.20241 1.21123 1.18546 1.48174 1.47734 1.13561 1.21968 1.21993 1.02353 0.80025 1.02314 1.20763 0.78901 0.86629 0.84969 1.90633 1.60388 1.19257 1.77465 1.21665 1.00501 0.92580 0.89331 0.82664 1.23510 0.93214 1.02767 1.03425 1.26109 1.02216 1.02875 0.95128 1.86712 1.35683 1.44649 1.19619 1.67388 1.27445 1.07084 1.27604 0.92977 0.91293 0.96145 0.92607 0.91487 0.90534 0.88862 0.82072 0.77419 0.82190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.95 71.98 0.64 -5.70 16 2 C 0.26 13.22 2.64 44.25 0.12 13.34 16 3 H 0.01 0.56 6.90 -2.39 -0.02 0.55 16 4 C -0.54 -28.28 8.37 25.60 0.21 -28.07 16 5 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.14 11.32 21.45 0.24 -51.90 16 8 Si 0.97 41.89 29.54 68.60 2.03 43.91 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 12 N -0.59 -23.52 2.75 -826.80 -2.28 -25.79 16 13 C 0.07 2.16 9.23 127.77 1.18 3.33 16 14 C 0.50 20.06 6.88 87.66 0.60 20.67 16 15 O -0.60 -29.49 14.97 -3.02 -0.05 -29.54 16 16 C 0.07 2.15 2.77 42.80 0.12 2.27 16 17 H 0.16 3.82 6.27 -2.39 -0.01 3.81 16 18 C -0.20 -4.79 9.28 24.62 0.23 -4.56 16 19 C -0.13 -2.70 11.42 67.10 0.77 -1.93 16 20 S 0.01 0.13 23.85 -56.49 -1.35 -1.22 16 21 N -0.57 -17.51 8.16 -173.78 -1.42 -18.93 16 22 H 0.05 2.19 6.66 -2.39 -0.02 2.17 16 23 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 2.24 6.43 -2.39 -0.02 2.22 16 28 H 0.09 1.96 5.93 -2.39 -0.01 1.95 16 29 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 30 H 0.21 2.73 8.06 -2.91 -0.02 2.71 16 31 H 0.36 12.30 7.48 -91.21 -0.68 11.62 16 Total: -1.00 -65.93 270.83 1.97 -63.96 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.47 Total: 18.91 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 4.32 Total: 0.60 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -3.45 Total: -96.63 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.05 Total: -29.54 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -1.35 Total: -1.22 kcal Total: -65.93 1.97 -63.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725633308.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.436 kcal (2) G-P(sol) polarization free energy of solvation -65.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds