Wall clock time and date at job start Mon Mar 30 2020 03:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47117 * 87.63451 * 3 2 1 5 5 C 1.36937 * 120.00349 * 263.68414 * 4 3 2 6 6 H 1.07998 * 119.99950 * 142.35995 * 5 4 3 7 7 C 1.38812 * 119.99886 * 322.36458 * 5 4 3 8 8 N 1.31617 * 120.00154 * 157.51315 * 7 5 4 9 9 Si 1.86800 * 120.00184 * 337.51648 * 7 5 4 10 10 H 1.48498 * 109.47325 * 95.70485 * 9 7 5 11 11 H 1.48501 * 109.47092 * 215.70826 * 9 7 5 12 12 H 1.48506 * 109.46862 * 335.70572 * 9 7 5 13 13 C 1.46500 * 119.99853 * 83.68807 * 4 3 2 14 14 C 1.50705 * 109.47195 * 89.99919 * 13 4 3 15 15 C 1.37973 * 120.07347 * 259.99736 * 14 13 4 16 16 C 1.38337 * 120.14454 * 180.02562 * 15 14 13 17 17 C 1.38379 * 120.31213 * 359.97438 * 16 15 14 18 18 C 1.37933 * 120.14923 * 0.02562 * 17 16 15 19 19 C 1.39610 * 120.07665 * 79.95525 * 14 13 4 20 20 C 1.43198 * 120.15307 * 0.04688 * 19 14 13 21 21 N 6.06975 * 133.99294 * 80.78518 * 2 1 3 22 22 H 1.09000 * 109.46910 * 327.63546 * 3 2 1 23 23 H 1.09003 * 109.46789 * 207.64006 * 3 2 1 24 24 H 0.96993 * 120.00749 * 180.02562 * 8 7 5 25 25 H 1.09000 * 109.47038 * 329.99806 * 13 4 3 26 26 H 1.09002 * 109.47379 * 210.00109 * 13 4 3 27 27 H 1.07998 * 119.92564 * 359.97438 * 15 14 13 28 28 H 1.08006 * 119.84300 * 180.02562 * 16 15 14 29 29 H 1.08003 * 119.92893 * 180.02562 * 17 16 15 30 30 H 1.08001 * 120.07416 * 179.71958 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0964 -0.0561 -1.3800 5 6 3.4482 -1.2585 -1.9330 6 1 3.2269 -1.4611 -2.9704 7 6 4.0891 -2.2169 -1.1599 8 7 4.0381 -3.4851 -1.5083 9 14 5.0238 -1.7068 0.3748 10 1 4.1484 -1.8665 1.5636 11 1 6.2279 -2.5623 0.5282 12 1 5.4383 -0.2860 0.2526 13 6 3.2085 1.1735 -2.1685 14 6 4.5783 1.7712 -1.9750 15 6 4.7562 2.8234 -1.1004 16 6 6.0129 3.3736 -0.9220 17 6 7.0995 2.8734 -1.6178 18 6 6.9358 1.8219 -2.4953 19 6 5.6702 1.2610 -2.6796 20 6 5.4929 0.1692 -3.5890 21 7 5.3519 -0.6993 -4.3104 22 1 2.9717 -0.8672 0.5501 23 1 2.9709 0.9113 0.4768 24 1 4.4856 -4.1549 -0.9680 25 1 2.4515 1.8858 -1.8403 26 1 3.0580 0.9437 -3.2233 27 1 3.9125 3.2189 -0.5545 28 1 6.1467 4.1968 -0.2358 29 1 8.0779 3.3074 -1.4734 30 1 7.7838 1.4354 -3.0410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019503272.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:39 Heat of formation + Delta-G solvation = 111.552414 kcal Electronic energy + Delta-G solvation = -16545.711049 eV Core-core repulsion = 13921.376981 eV Total energy + Delta-G solvation = -2624.334068 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.33243 -36.78258 -35.54453 -34.99371 -32.31318 -31.08856 -30.91074 -27.70203 -26.12237 -23.35959 -22.48644 -20.77267 -18.35736 -18.00291 -16.45766 -15.56550 -15.32620 -15.22596 -14.71593 -14.22283 -13.44990 -13.37755 -13.24507 -12.73753 -12.49611 -12.32886 -12.11698 -11.97660 -11.89516 -11.76676 -11.41941 -11.19187 -10.86414 -10.73758 -10.58774 -10.19163 -9.78532 -8.84285 -8.66693 -8.43758 -7.32220 -6.19996 -3.67496 1.19227 1.57126 3.10881 3.30486 3.34654 3.37790 3.51690 3.52697 3.57969 4.30340 4.34175 4.62369 4.77892 4.95166 5.06881 5.07884 5.14065 5.29268 5.49162 5.71369 5.82293 5.86526 6.02072 6.09407 6.19683 6.35295 6.54006 6.62736 6.81675 7.09622 7.72274 8.14033 8.28960 8.38063 8.67805 9.42318 9.72727 10.93568 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.018548 B = 0.011525 C = 0.009563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.202343 B = 2429.012186 C = 2927.213765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.207 3.793 3 C 0.215 3.785 4 N -0.578 5.578 5 C -0.282 4.282 6 H 0.090 0.910 7 C 0.050 3.950 8 N -0.875 5.875 9 Si 0.852 3.148 10 H -0.279 1.279 11 H -0.293 1.293 12 H -0.252 1.252 13 C 0.170 3.830 14 C -0.046 4.046 15 C -0.121 4.121 16 C -0.102 4.102 17 C -0.135 4.135 18 C -0.081 4.081 19 C 0.001 3.999 20 C 0.251 3.749 21 N -0.400 5.400 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.268 0.732 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 14.584 3.045 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.113 4.113 3 C 0.086 3.914 4 N -0.298 5.298 5 C -0.410 4.410 6 H 0.107 0.893 7 C -0.154 4.154 8 N -0.513 5.513 9 Si 0.679 3.321 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.176 1.176 13 C 0.045 3.955 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.121 4.121 17 C -0.154 4.154 18 C -0.102 4.102 19 C -0.003 4.003 20 C -0.065 4.065 21 N -0.075 5.075 22 H 0.117 0.883 23 H 0.106 0.894 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.926 12.997 1.908 14.030 hybrid contribution 1.190 0.221 1.342 1.808 sum 6.116 13.218 3.250 14.923 Atomic orbital electron populations 1.80993 1.14032 1.10566 1.09621 1.31258 0.96696 0.91504 0.91797 1.19128 0.79947 1.02884 0.89460 1.44117 1.71567 1.03652 1.10456 1.18867 1.34534 0.88868 0.98727 0.89271 1.25495 0.96910 0.95112 0.97913 1.69851 1.41842 0.99942 1.39661 0.87277 0.80895 0.80343 0.83564 1.20689 1.22062 1.17563 1.20209 0.89958 0.87828 0.97498 1.20997 0.97679 0.92941 0.93570 1.20964 0.97499 0.96684 0.98843 1.21232 0.92816 0.99389 0.98625 1.20915 0.98921 0.97578 0.97946 1.21135 0.95516 0.95679 0.97823 1.15882 0.94274 0.93171 0.97013 1.25337 0.94348 0.93223 0.93574 1.81222 1.06310 1.08145 1.11794 0.88334 0.89418 0.92218 0.91892 0.91239 0.85632 0.86101 0.85875 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.07 18.54 42.15 0.78 -9.29 16 2 C 0.21 4.09 15.75 -20.76 -0.33 3.77 16 3 C 0.22 4.01 4.76 -6.83 -0.03 3.97 16 4 N -0.58 -11.99 2.02 -177.95 -0.36 -12.35 16 5 C -0.28 -7.16 7.81 -15.06 -0.12 -7.28 16 6 H 0.09 2.59 7.64 -52.49 -0.40 2.19 16 7 C 0.05 1.32 5.26 -17.43 -0.09 1.23 16 8 N -0.88 -25.54 13.97 55.49 0.78 -24.77 16 9 Si 0.85 19.48 25.06 -169.99 -4.26 15.23 16 10 H -0.28 -6.08 6.69 56.52 0.38 -5.70 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.36 7.11 56.52 0.40 -4.96 16 13 C 0.17 2.92 5.40 -5.19 -0.03 2.89 16 14 C -0.05 -0.72 5.50 -104.21 -0.57 -1.29 16 15 C -0.12 -1.50 9.66 -39.64 -0.38 -1.88 16 16 C -0.10 -1.10 10.04 -39.49 -0.40 -1.50 16 17 C -0.14 -1.51 10.03 -39.64 -0.40 -1.90 16 18 C -0.08 -1.09 9.76 -39.17 -0.38 -1.47 16 19 C 0.00 0.01 5.73 -106.93 -0.61 -0.60 16 20 C 0.25 4.97 12.20 -22.42 -0.27 4.70 16 21 N -0.40 -8.99 17.89 41.91 0.75 -8.24 16 22 H 0.10 2.01 3.64 -51.93 -0.19 1.82 16 23 H 0.09 1.28 8.12 -51.93 -0.42 0.86 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.06 0.91 7.93 -51.93 -0.41 0.50 16 26 H 0.07 1.28 7.38 -51.93 -0.38 0.89 16 27 H 0.13 1.27 8.03 -52.49 -0.42 0.84 16 28 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 275.49 15.07 4.15 4.15 Total: -1.00 -31.20 275.49 -4.43 -35.63 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.65 Total: -0.98 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -3.61 Total: 0.63 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 1.95 Total: -54.66 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.26 Total: 15.23 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.20 -4.43 -35.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019503272.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.179 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds