Wall clock time and date at job start Mon Mar 30 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48499 * 109.47087 * 239.99845 * 3 2 1 5 5 H 1.48500 * 109.47164 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47041 * 120.00012 * 3 2 1 7 7 C 1.37878 * 120.00201 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00078 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47269 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00138 * 269.99964 * 10 9 7 12 12 O 1.21285 * 120.00120 * 185.94315 * 11 10 9 13 13 C 1.50709 * 120.00174 * 5.94389 * 11 10 9 14 14 C 1.52992 * 109.47181 * 182.77871 * 13 11 10 15 15 C 1.50699 * 109.47172 * 180.02562 * 14 13 11 16 16 O 1.20830 * 120.00018 * 0.02562 * 15 14 13 17 17 O 1.34237 * 120.00422 * 180.02562 * 15 14 13 18 18 C 1.46504 * 119.99624 * 90.00249 * 10 9 7 19 19 C 1.52999 * 117.49323 * 196.39356 * 18 10 9 20 20 C 1.52997 * 117.49780 * 127.73392 * 18 10 9 21 21 H 0.97004 * 120.00219 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.46655 * 59.99893 * 9 7 2 23 23 H 1.09001 * 109.46971 * 300.00758 * 9 7 2 24 24 H 1.09002 * 109.47084 * 302.78583 * 13 11 10 25 25 H 1.09006 * 109.46706 * 62.78311 * 13 11 10 26 26 H 1.09002 * 109.47693 * 300.00339 * 14 13 11 27 27 H 1.09000 * 109.47271 * 60.00292 * 14 13 11 28 28 H 0.96699 * 116.99732 * 180.02562 * 17 15 14 29 29 H 1.08995 * 115.55158 * 342.05949 * 18 10 9 30 30 H 1.08997 * 117.50631 * 359.97438 * 19 18 10 31 31 H 1.08998 * 117.49581 * 145.02355 * 19 18 10 32 32 H 1.08993 * 117.50284 * 214.97569 * 20 18 10 33 33 H 1.08999 * 117.49993 * 359.97438 * 20 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6127 0.0015 11 6 2.6401 -4.1254 -1.1658 12 8 3.3424 -5.1142 -1.1687 13 6 2.2561 -3.4701 -2.4675 14 6 2.8206 -4.2834 -3.6339 15 6 2.4372 -3.6278 -4.9355 16 8 1.7802 -2.6137 -4.9306 17 8 2.8255 -4.1703 -6.1003 18 6 2.6800 -4.1689 1.2701 19 6 3.9333 -5.0454 1.2304 20 6 2.5613 -5.6814 1.4674 21 1 -0.4851 0.8401 -0.0004 22 1 0.6241 -2.5575 -0.8881 23 1 0.6247 -2.5563 0.8919 24 1 1.1698 -3.4275 -2.5462 25 1 2.6626 -2.4592 -2.4990 26 1 3.9069 -4.3260 -3.5551 27 1 2.4142 -5.2943 -3.6023 28 1 2.5557 -3.7135 -6.9088 29 1 2.5371 -3.5345 2.1449 30 1 4.4028 -5.2087 0.2603 31 1 4.6147 -4.9880 2.0792 32 1 2.3406 -6.0422 2.4720 33 1 2.1280 -6.2627 0.6535 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038098459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:24 Heat of formation + Delta-G solvation = -119.912167 kcal Electronic energy + Delta-G solvation = -17528.161635 eV Core-core repulsion = 14554.188838 eV Total energy + Delta-G solvation = -2973.972797 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51679 -40.92475 -37.50937 -37.08919 -36.02025 -34.22915 -33.51969 -29.02969 -27.43116 -24.85077 -23.67853 -23.19232 -21.81279 -19.97480 -18.99790 -18.65068 -17.99951 -17.39300 -17.30240 -16.72225 -16.38292 -16.01088 -15.23963 -14.64547 -14.43501 -14.21544 -14.02965 -13.74945 -13.53558 -13.03751 -12.85303 -12.63947 -12.54387 -12.39694 -12.28026 -12.12492 -11.95669 -11.62483 -11.45237 -11.17320 -10.63348 -10.30135 -9.20613 -8.20631 -6.35815 1.22150 1.41376 1.42714 1.49828 1.64568 1.93599 2.34931 2.48324 3.09353 3.11949 3.66954 3.75137 4.05263 4.07456 4.24392 4.27851 4.50394 4.65019 4.75394 4.81274 4.86825 4.94555 5.05308 5.14080 5.20411 5.45166 5.63340 5.67283 5.95072 6.03196 6.53802 6.79550 7.02313 7.27464 7.38739 8.84328 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.009835 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.523286 B = 2846.198659 C = 4450.336211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.254 3.746 10 N -0.572 5.572 11 C 0.516 3.484 12 O -0.570 6.570 13 C -0.120 4.120 14 C -0.087 4.087 15 C 0.487 3.513 16 O -0.551 6.551 17 O -0.508 6.508 18 C 0.056 3.944 19 C -0.189 4.189 20 C -0.175 4.175 21 H 0.268 0.732 22 H 0.029 0.971 23 H 0.022 0.978 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.125 0.875 28 H 0.427 0.573 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.249 -8.359 -4.939 11.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.180 4.180 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.074 0.926 9 C 0.133 3.867 10 N -0.300 5.300 11 C 0.306 3.694 12 O -0.453 6.453 13 C -0.160 4.160 14 C -0.125 4.125 15 C 0.331 3.669 16 O -0.442 6.442 17 O -0.322 6.322 18 C -0.049 4.049 19 C -0.226 4.226 20 C -0.214 4.214 21 H 0.077 0.923 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.143 0.857 28 H 0.289 0.711 29 H 0.144 0.856 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.357 -8.644 -4.577 11.151 hybrid contribution -0.237 1.600 -0.426 1.673 sum 5.119 -7.044 -5.002 10.042 Atomic orbital electron populations 1.70000 1.07276 1.28255 1.50385 1.25669 0.95582 1.02414 0.94353 0.85639 0.78453 0.78922 0.78891 1.19876 1.20722 1.19370 1.21639 0.93360 0.91522 1.51959 0.92650 1.19095 0.87325 0.82811 0.97463 1.47597 1.43870 1.34018 1.04482 1.20580 0.79496 0.83418 0.85890 1.90453 1.40234 1.26874 1.87752 1.21323 1.03212 1.00531 0.90896 1.20985 1.05061 1.00646 0.85824 1.23539 0.74984 0.81654 0.86681 1.90784 1.38532 1.26344 1.88518 1.84489 1.73213 1.57160 1.17324 1.21795 1.03032 0.92224 0.87815 1.23729 0.91478 1.02382 1.05036 1.23215 1.00672 0.94614 1.02866 0.92341 0.95286 0.95950 0.89259 0.89107 0.85958 0.85710 0.71085 0.85628 0.86509 0.87604 0.86521 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.84 13.29 21.45 0.28 -51.56 16 2 C 0.02 1.09 5.46 84.66 0.46 1.55 16 3 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -28.73 9.28 25.60 0.24 -28.49 16 8 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16 9 C 0.25 12.31 4.96 85.63 0.43 12.73 16 10 N -0.57 -23.98 2.82 -802.13 -2.26 -26.24 16 11 C 0.52 20.28 7.46 87.66 0.65 20.94 16 12 O -0.57 -22.13 11.73 -3.05 -0.04 -22.17 16 13 C -0.12 -4.34 3.77 29.85 0.11 -4.23 16 14 C -0.09 -2.42 5.10 29.84 0.15 -2.27 16 15 C 0.49 13.55 8.33 71.24 0.59 14.14 16 16 O -0.55 -20.06 16.74 21.95 0.37 -19.69 16 17 O -0.51 -10.12 13.42 -51.48 -0.69 -10.81 16 18 C 0.06 2.05 6.60 44.99 0.30 2.35 16 19 C -0.19 -6.12 9.63 30.62 0.29 -5.82 16 20 C -0.18 -5.45 9.88 30.62 0.30 -5.15 16 21 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 22 H 0.03 1.48 6.41 -2.38 -0.02 1.46 16 23 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 24 H 0.09 3.40 7.04 -2.39 -0.02 3.39 16 25 H 0.09 3.70 8.00 -2.38 -0.02 3.68 16 26 H 0.12 3.13 8.07 -2.39 -0.02 3.11 16 27 H 0.12 3.06 8.13 -2.39 -0.02 3.05 16 28 H 0.43 4.76 9.10 -74.06 -0.67 4.08 16 29 H 0.13 4.53 8.14 -2.39 -0.02 4.51 16 30 H 0.12 4.28 5.22 -5.34 -0.03 4.25 16 31 H 0.11 2.86 8.14 -2.39 -0.02 2.85 16 32 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.08 2.70 7.60 -2.39 -0.02 2.68 16 Total: -1.00 -64.00 287.52 3.66 -60.34 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.44 Total: 19.71 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 3.53 Total: 5.75 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -1.98 Total: -77.80 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.36 Total: -52.67 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -64.00 3.66 -60.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038098459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.571 kcal (2) G-P(sol) polarization free energy of solvation -64.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds