Wall clock time and date at job start Mon Mar 30 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30302 * 126.33874 * 90.02582 * 4 3 2 6 6 N 1.28526 * 110.07912 * 179.97438 * 5 4 3 7 7 C 1.31289 * 109.85218 * 359.97438 * 6 5 4 8 8 S 1.76200 * 126.48201 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99950 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47116 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00086 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99837 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00323 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99823 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46824 * 89.99943 * 14 12 10 16 16 H 1.48498 * 109.47108 * 210.00052 * 14 12 10 17 17 H 1.48497 * 109.47155 * 329.99969 * 14 12 10 18 18 N 1.36530 * 107.03454 * 359.77532 * 7 6 5 19 19 C 1.46503 * 127.14435 * 180.23188 * 18 7 6 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.09000 * 109.47168 * 299.99818 * 9 8 7 28 28 H 1.08993 * 109.47526 * 59.99605 * 9 8 7 29 29 H 0.96999 * 120.00228 * 179.97438 * 13 12 10 30 30 H 1.09005 * 109.46889 * 270.14600 * 19 18 7 31 31 H 1.08996 * 109.47133 * 30.14070 * 19 18 7 32 32 H 1.09001 * 109.47256 * 150.15079 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4433 -1.0506 6 7 5.5526 1.4437 -0.6912 7 6 5.6354 1.4438 0.6190 8 16 7.1154 1.4437 1.5752 9 6 8.3467 1.4426 0.2485 10 6 9.7299 1.4417 0.8469 11 1 9.8542 1.4423 1.9198 12 6 10.8367 1.4413 0.0247 13 7 10.6854 1.4412 -1.2817 14 14 12.5512 1.4410 0.7664 15 1 13.0051 0.0408 0.9631 16 1 13.4871 2.1406 -0.1500 17 1 12.5243 2.1412 2.0756 18 7 4.3579 1.4486 1.1005 19 6 3.9420 1.4553 2.5053 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 8.2170 0.5524 -0.3669 28 1 8.2177 2.3322 -0.3678 29 1 11.4641 1.4413 -1.8602 30 1 3.8391 0.4293 2.8586 31 1 4.6921 1.9721 3.1038 32 1 2.9853 1.9693 2.5985 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038339282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:51 Heat of formation + Delta-G solvation = 52.408709 kcal Electronic energy + Delta-G solvation = -14652.606434 eV Core-core repulsion = 12161.151654 eV Total energy + Delta-G solvation = -2491.454780 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.44597 -35.54478 -34.49723 -33.17747 -30.66344 -28.62597 -27.58967 -26.75176 -23.23703 -22.20647 -22.11029 -20.34966 -17.49553 -16.32492 -16.08206 -15.93040 -15.06017 -14.81408 -14.56140 -13.62434 -13.34419 -13.17538 -12.84292 -12.42668 -12.37473 -12.32610 -11.89097 -11.49918 -11.18802 -10.96944 -10.91712 -10.81296 -10.50140 -10.01868 -9.92043 -9.65856 -9.34571 -9.21775 -8.59973 -6.86114 -6.19031 -4.27652 1.85813 2.02584 2.92925 3.24513 3.25623 3.31274 3.33421 3.49345 4.33272 4.37911 4.65058 4.71010 4.81911 5.04665 5.12872 5.17072 5.21363 5.34152 5.47342 5.56954 5.68359 5.80275 5.90774 6.07049 6.16480 6.37391 7.04177 7.13247 7.24361 7.68237 7.93604 8.73065 9.11387 9.35809 10.91313 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.058159 B = 0.004761 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.326437 B = 5880.043850 C = 6206.015537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.024 4.024 4 C 0.159 3.841 5 N -0.287 5.287 6 N -0.291 5.291 7 C 0.177 3.823 8 S -0.060 6.060 9 C 0.080 3.920 10 C -0.527 4.527 11 H 0.067 0.933 12 C 0.071 3.929 13 N -0.881 5.881 14 Si 0.908 3.092 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.271 1.271 18 N -0.474 5.474 19 C 0.078 3.922 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.268 0.732 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.500 -0.869 7.444 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.064 4.064 4 C -0.111 4.111 5 N -0.127 5.127 6 N -0.134 5.134 7 C -0.197 4.197 8 S 0.169 5.831 9 C -0.067 4.067 10 C -0.567 4.567 11 H 0.085 0.915 12 C -0.135 4.135 13 N -0.517 5.517 14 Si 0.734 3.266 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.195 1.195 18 N -0.169 5.169 19 C -0.066 4.066 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.822 -0.853 6.991 18.237 hybrid contribution 0.363 -0.003 0.341 0.498 sum -16.459 -0.855 7.332 18.038 Atomic orbital electron populations 1.21756 0.95076 1.01948 1.01950 1.21511 0.95922 0.95463 1.02969 1.19984 0.83900 0.98503 1.04035 1.24878 0.96190 1.07156 0.82839 1.73920 0.96963 1.17584 1.24228 1.74832 1.10919 1.20630 1.07063 1.27413 0.90909 1.05807 0.95548 1.85367 0.91012 1.91483 1.15232 1.21325 0.91423 1.02553 0.91424 1.20588 0.88357 1.54274 0.93510 0.91483 1.24945 0.99407 0.94389 0.94724 1.69984 1.30899 1.48134 1.02722 0.86341 0.82788 0.78384 0.79049 1.20266 1.20855 1.19542 1.46324 1.05294 1.57040 1.08292 1.22014 1.02305 1.03889 0.78371 0.92449 0.92710 0.92331 0.92087 0.90994 0.88549 0.90405 0.92901 0.92903 0.92261 0.90235 0.88830 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 3 C -0.02 -0.26 5.59 -27.89 -0.16 -0.42 16 4 C 0.16 2.60 7.32 -153.99 -1.13 1.47 16 5 N -0.29 -6.04 12.18 32.99 0.40 -5.64 16 6 N -0.29 -6.92 11.60 30.68 0.36 -6.56 16 7 C 0.18 3.72 8.07 -88.34 -0.71 3.01 16 8 S -0.06 -1.28 21.73 -107.50 -2.34 -3.62 16 9 C 0.08 2.15 4.99 36.01 0.18 2.32 16 10 C -0.53 -14.67 9.13 -34.44 -0.31 -14.98 16 11 H 0.07 1.80 7.71 -52.48 -0.40 1.39 16 12 C 0.07 1.99 5.46 -17.82 -0.10 1.89 16 13 N -0.88 -26.04 13.29 55.43 0.74 -25.30 16 14 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 N -0.47 -7.76 3.21 -120.90 -0.39 -8.15 16 19 C 0.08 0.82 10.91 59.85 0.65 1.48 16 20 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 21 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.63 7.26 -51.93 -0.38 0.25 16 27 H 0.05 1.53 8.14 -51.92 -0.42 1.10 16 28 H 0.05 1.53 8.14 -51.92 -0.42 1.10 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 32 H 0.09 0.65 7.25 -51.93 -0.38 0.27 16 LS Contribution 291.83 15.07 4.40 4.40 Total: -1.00 -33.06 291.83 -7.72 -40.78 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: -4.51 Total: -4.77 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.36 Total: -7.20 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 1.11 Total: -45.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.34 Total: -3.62 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.06 -7.72 -40.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038339282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.192 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds