Wall clock time and date at job start Mon Mar 30 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 5 5 N 1.30302 * 126.33874 * 90.02582 * 4 3 2 6 6 N 1.28526 * 110.07912 * 179.97438 * 5 4 3 7 7 C 1.31289 * 109.85218 * 359.97438 * 6 5 4 8 8 S 1.76200 * 126.48201 * 179.97438 * 7 6 5 9 9 C 1.81004 * 99.99950 * 359.97438 * 8 7 6 10 10 C 1.50703 * 109.47116 * 180.02562 * 9 8 7 11 11 H 1.08005 * 120.00086 * 359.97438 * 10 9 8 12 12 C 1.37878 * 119.99837 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00323 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99823 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46824 * 89.99943 * 14 12 10 16 16 H 1.48498 * 109.47108 * 210.00052 * 14 12 10 17 17 H 1.48497 * 109.47155 * 329.99969 * 14 12 10 18 18 N 1.36530 * 107.03454 * 359.77532 * 7 6 5 19 19 C 1.46503 * 127.14435 * 180.23188 * 18 7 6 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.09000 * 109.47168 * 299.99818 * 9 8 7 28 28 H 1.08993 * 109.47526 * 59.99605 * 9 8 7 29 29 H 0.96999 * 120.00228 * 179.97438 * 13 12 10 30 30 H 1.09005 * 109.46889 * 270.14600 * 19 18 7 31 31 H 1.08996 * 109.47133 * 30.14070 * 19 18 7 32 32 H 1.09001 * 109.47256 * 150.15079 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3186 1.4433 -1.0506 6 7 5.5526 1.4437 -0.6912 7 6 5.6354 1.4438 0.6190 8 16 7.1154 1.4437 1.5752 9 6 8.3467 1.4426 0.2485 10 6 9.7299 1.4417 0.8469 11 1 9.8542 1.4423 1.9198 12 6 10.8367 1.4413 0.0247 13 7 10.6854 1.4412 -1.2817 14 14 12.5512 1.4410 0.7664 15 1 13.0051 0.0408 0.9631 16 1 13.4871 2.1406 -0.1500 17 1 12.5243 2.1412 2.0756 18 7 4.3579 1.4486 1.1005 19 6 3.9420 1.4553 2.5053 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 8.2170 0.5524 -0.3669 28 1 8.2177 2.3322 -0.3678 29 1 11.4641 1.4413 -1.8602 30 1 3.8391 0.4293 2.8586 31 1 4.6921 1.9721 3.1038 32 1 2.9853 1.9693 2.5985 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038339282.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:50 Heat of formation + Delta-G solvation = 32.062462 kcal Electronic energy + Delta-G solvation = -14653.488714 eV Core-core repulsion = 12161.151654 eV Total energy + Delta-G solvation = -2492.337060 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.90489 -36.55177 -35.66055 -35.31206 -31.93347 -30.74779 -28.68944 -27.76596 -25.30559 -23.74620 -23.01604 -21.52784 -19.11512 -18.24492 -17.44695 -17.30635 -16.65957 -15.86259 -15.81921 -14.98051 -14.61389 -14.45400 -14.38649 -14.15590 -13.75176 -13.06178 -13.00774 -12.74774 -12.62296 -12.58319 -12.32347 -12.20111 -11.73786 -11.65790 -11.55491 -11.27403 -11.10624 -10.89181 -10.66051 -8.58405 -8.32972 -6.51678 0.22537 0.61452 1.40559 1.43250 1.44877 1.57347 1.72087 1.75921 2.36887 3.01411 3.32517 3.69941 3.88032 4.06108 4.24905 4.28410 4.37375 4.56852 4.62988 4.74103 4.87369 4.88024 4.94164 4.96098 5.01031 5.20048 5.29231 5.45017 5.51834 5.77811 5.83458 6.57648 7.18250 7.60678 8.79390 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.058159 B = 0.004761 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.326437 B = 5880.043850 C = 6206.015537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.023 4.023 4 C 0.187 3.813 5 N -0.339 5.339 6 N -0.344 5.344 7 C 0.150 3.850 8 S -0.005 6.005 9 C 0.079 3.921 10 C -0.545 4.545 11 H 0.078 0.922 12 C 0.014 3.986 13 N -0.924 5.924 14 Si 0.985 3.015 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.256 1.256 18 N -0.465 5.465 19 C 0.062 3.938 20 H 0.061 0.939 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.046 0.954 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.271 0.729 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 -0.756 10.126 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C -0.063 4.063 4 C -0.084 4.084 5 N -0.178 5.178 6 N -0.188 5.188 7 C -0.226 4.226 8 S 0.224 5.776 9 C -0.070 4.070 10 C -0.585 4.585 11 H 0.096 0.904 12 C -0.188 4.188 13 N -0.562 5.562 14 Si 0.807 3.193 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.180 1.180 18 N -0.159 5.159 19 C -0.078 4.078 20 H 0.080 0.920 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.121 0.879 26 H 0.137 0.863 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.536 -0.742 9.706 20.937 hybrid contribution 0.654 -0.048 -0.482 0.814 sum -17.883 -0.789 9.224 20.137 Atomic orbital electron populations 1.21714 0.92651 1.02655 1.03074 1.21470 0.97862 0.94169 1.01949 1.20367 0.79584 0.99938 1.06386 1.25955 0.98133 1.02585 0.81710 1.73813 0.96631 1.20726 1.26665 1.74708 1.12972 1.22087 1.09017 1.27257 0.92538 1.07533 0.95306 1.84683 0.89371 1.92096 1.11500 1.20886 0.94060 0.99039 0.92989 1.20978 0.89067 1.54313 0.94103 0.90421 1.26057 1.04321 0.93384 0.95003 1.70138 1.32441 1.49064 1.04543 0.85152 0.76639 0.78898 0.78579 1.19234 1.20395 1.18003 1.46636 1.03343 1.55367 1.10536 1.22567 1.04333 1.06016 0.74917 0.92032 0.90738 0.92055 0.91750 0.93546 0.87870 0.86332 0.96605 0.96568 0.91989 0.88134 0.88709 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.89 5.92 30.59 0.18 -1.71 16 3 C -0.02 -0.42 5.59 29.85 0.17 -0.25 16 4 C 0.19 5.87 7.32 137.63 1.01 6.88 16 5 N -0.34 -14.66 12.18 -49.53 -0.60 -15.26 16 6 N -0.34 -17.16 11.60 -56.85 -0.66 -17.82 16 7 C 0.15 6.40 8.07 179.55 1.45 7.84 16 8 S -0.01 -0.22 21.73 -56.49 -1.23 -1.45 16 9 C 0.08 4.45 4.99 71.24 0.36 4.81 16 10 C -0.55 -31.09 9.13 25.60 0.23 -30.85 16 11 H 0.08 4.16 7.71 -2.91 -0.02 4.13 16 12 C 0.01 0.80 5.46 84.66 0.46 1.26 16 13 N -0.92 -56.73 13.29 21.45 0.28 -56.45 16 14 Si 0.99 43.35 29.54 68.60 2.03 45.38 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 16 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 N -0.46 -14.47 3.21 -536.43 -1.72 -16.20 16 19 C 0.06 1.09 10.91 127.77 1.39 2.48 16 20 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 21 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.12 1.25 7.26 -2.39 -0.02 1.23 16 27 H 0.02 0.98 8.14 -2.40 -0.02 0.96 16 28 H 0.02 1.00 8.14 -2.40 -0.02 0.98 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.10 1.41 8.14 -2.38 -0.02 1.40 16 31 H 0.09 1.69 7.86 -2.39 -0.02 1.68 16 32 H 0.13 1.19 7.25 -2.39 -0.02 1.18 16 Total: -1.00 -77.33 291.83 5.16 -72.17 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.10 Total: -0.04 kcal Atomic # 6 Polarization: -16.29 SS G_CDS: 5.96 Total: -10.33 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -2.70 Total: -105.73 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.23 Total: -1.45 kcal Total: -77.33 5.16 -72.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038339282.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.232 kcal (2) G-P(sol) polarization free energy of solvation -77.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds