Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47154 * 270.00060 * 3 2 1 5 5 H 1.48503 * 109.47009 * 30.00260 * 3 2 1 6 6 H 1.48503 * 109.47397 * 149.99806 * 3 2 1 7 7 C 1.38950 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99700 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99765 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.46924 * 182.13842 * 12 10 9 14 14 C 1.50703 * 110.05870 * 57.14263 * 13 12 10 15 15 O 1.20823 * 119.99914 * 232.95758 * 14 13 12 16 16 O 1.34226 * 119.99537 * 52.95389 * 14 13 12 17 17 C 1.54262 * 110.03561 * 295.72371 * 13 12 10 18 18 C 1.54896 * 104.19955 * 264.32722 * 17 13 12 19 19 C 1.54890 * 102.74459 * 322.05838 * 18 17 13 20 20 C 1.53879 * 110.03322 * 178.55740 * 13 12 10 21 21 H 0.96999 * 120.00079 * 359.97438 * 1 2 3 22 22 H 0.96991 * 120.00387 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.47218 * 62.13662 * 12 10 9 24 24 H 1.08998 * 109.47283 * 302.13638 * 12 10 9 25 25 H 0.96701 * 116.99428 * 180.02562 * 16 14 13 26 26 H 1.08998 * 110.49040 * 145.64928 * 17 13 12 27 27 H 1.09003 * 110.48614 * 23.00093 * 17 13 12 28 28 H 1.09003 * 110.75283 * 80.36916 * 18 17 13 29 29 H 1.08992 * 110.75813 * 203.74272 * 18 17 13 30 30 H 1.09004 * 110.48453 * 156.62257 * 19 18 17 31 31 H 1.09007 * 110.48360 * 279.25772 * 19 18 17 32 32 H 1.09005 * 110.03141 * 0.02562 * 20 13 12 33 33 H 1.08998 * 110.03553 * 238.57043 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 6 2.2371 -6.0253 0.0572 14 6 3.1175 -5.8957 1.2735 15 8 4.3195 -5.9261 1.1552 16 8 2.5660 -5.7466 2.4881 17 6 3.1009 -6.0432 -1.2208 18 6 2.3843 -7.0545 -2.1497 19 6 1.9101 -8.1492 -1.1618 20 6 1.4800 -7.3644 0.0947 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.6465 -4.9381 -0.9066 24 1 0.5884 -4.9037 0.8721 25 1 3.1712 -5.6672 3.2381 26 1 4.1112 -6.3835 -0.9937 27 1 3.1244 -5.0545 -1.6793 28 1 1.5336 -6.5874 -2.6460 29 1 3.0796 -7.4681 -2.8800 30 1 1.0646 -8.6976 -1.5772 31 1 2.7282 -8.8297 -0.9252 32 1 0.4049 -7.1862 0.0733 33 1 1.7493 -7.9205 0.9926 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040605419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = -148.446337 kcal Electronic energy + Delta-G solvation = -17998.708128 eV Core-core repulsion = 15023.497997 eV Total energy + Delta-G solvation = -2975.210131 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.49211 -38.25274 -37.14747 -35.52924 -33.97071 -31.46142 -30.97503 -28.59274 -26.64756 -24.27323 -22.96035 -20.73601 -19.63332 -18.74242 -17.89814 -17.25379 -16.41997 -15.94515 -15.26115 -14.78822 -14.49778 -14.28071 -13.85437 -13.70619 -13.11879 -12.68281 -12.23517 -11.85906 -11.63789 -11.40258 -11.14777 -11.09672 -10.98804 -10.82343 -10.75973 -10.55189 -10.39105 -10.31364 -10.20499 -9.78007 -9.49925 -8.37186 -7.97668 -6.43110 -3.83719 2.82196 3.17033 3.25938 3.32221 3.48508 3.88942 4.15911 4.53484 4.72161 4.88102 5.10515 5.23780 5.36725 5.48663 5.62039 5.66375 5.75011 5.79422 5.91542 5.96713 6.04427 6.16350 6.22957 6.35056 6.40935 6.61707 6.74207 7.01527 7.54358 8.03839 8.44128 8.58550 9.15962 9.52289 10.03109 10.74449 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.006506 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.550456 B = 4302.486240 C = 4511.528584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.584 6.584 12 C -0.122 4.122 13 C -0.027 4.027 14 C 0.503 3.497 15 O -0.507 6.507 16 O -0.521 6.521 17 C -0.104 4.104 18 C -0.128 4.128 19 C -0.124 4.124 20 C -0.113 4.113 21 H 0.272 0.728 22 H 0.393 0.607 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.402 0.598 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -13.108 -0.221 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.194 5.194 10 C 0.219 3.781 11 O -0.470 6.470 12 C -0.162 4.162 13 C -0.028 4.028 14 C 0.345 3.655 15 O -0.394 6.394 16 O -0.332 6.332 17 C -0.141 4.141 18 C -0.165 4.165 19 C -0.161 4.161 20 C -0.151 4.151 21 H 0.082 0.918 22 H 0.226 0.774 23 H 0.109 0.891 24 H 0.107 0.893 25 H 0.260 0.740 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.634 -12.972 -0.586 13.001 hybrid contribution 0.119 1.088 0.605 1.250 sum -0.515 -11.885 0.019 11.896 Atomic orbital electron populations 1.69609 1.05935 1.28197 1.50427 1.25264 0.95627 0.99739 0.97238 0.85865 0.79257 0.80804 0.78419 1.20368 1.20892 1.19435 1.19722 0.93388 0.82283 1.47584 0.87930 1.41871 1.09209 1.04626 1.63735 1.19908 0.88466 0.85033 0.84743 1.90603 1.13496 1.87015 1.55880 1.21689 0.97917 0.92645 1.03987 1.20796 0.94725 0.96067 0.91244 1.22980 0.87877 0.70893 0.83775 1.90615 1.16676 1.45992 1.86092 1.84506 1.45610 1.85242 1.17849 1.22451 0.98747 1.00913 0.91988 1.22573 1.00190 0.96253 0.97502 1.22375 1.00722 0.97700 0.95331 1.22244 1.00432 0.93559 0.98818 0.91838 0.77397 0.89065 0.89334 0.74027 0.89950 0.89424 0.91316 0.91382 0.91419 0.91659 0.90204 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 13.05 55.50 0.72 -23.79 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 9 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 10 C 0.43 10.13 6.93 -10.99 -0.08 10.05 16 11 O -0.58 -15.67 12.61 -0.92 -0.01 -15.69 16 12 C -0.12 -2.12 4.39 -27.88 -0.12 -2.24 16 13 C -0.03 -0.44 0.59 -154.54 -0.09 -0.53 16 14 C 0.50 9.41 4.93 36.01 0.18 9.58 16 15 O -0.51 -11.01 15.91 -22.22 -0.35 -11.37 16 16 O -0.52 -8.31 13.21 -39.25 -0.52 -8.83 16 17 C -0.10 -1.74 5.03 -25.07 -0.13 -1.87 16 18 C -0.13 -1.58 6.91 -24.73 -0.17 -1.76 16 19 C -0.12 -1.35 6.83 -25.07 -0.17 -1.52 16 20 C -0.11 -1.39 6.10 -25.61 -0.16 -1.54 16 21 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 22 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 23 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 24 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 25 H 0.40 4.80 9.10 45.56 0.41 5.22 16 26 H 0.08 1.50 6.81 -51.93 -0.35 1.14 16 27 H 0.09 1.71 6.34 -51.93 -0.33 1.38 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.08 0.85 7.67 -51.93 -0.40 0.46 16 33 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 277.59 15.07 4.18 4.18 Total: -1.00 -33.24 277.59 -5.47 -38.70 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -3.43 Total: 12.69 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.98 Total: 2.15 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.67 Total: -38.03 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.88 Total: -35.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.24 -5.47 -38.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040605419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.745 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds