Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86799 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47154 * 270.00060 * 3 2 1 5 5 H 1.48503 * 109.47009 * 30.00260 * 3 2 1 6 6 H 1.48503 * 109.47397 * 149.99806 * 3 2 1 7 7 C 1.38950 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00164 * 179.97438 * 7 2 1 9 9 N 1.37100 * 119.99823 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99700 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00088 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99765 * 179.97438 * 10 9 7 13 13 C 1.52998 * 109.46924 * 182.13842 * 12 10 9 14 14 C 1.50703 * 110.05870 * 57.14263 * 13 12 10 15 15 O 1.20823 * 119.99914 * 232.95758 * 14 13 12 16 16 O 1.34226 * 119.99537 * 52.95389 * 14 13 12 17 17 C 1.54262 * 110.03561 * 295.72371 * 13 12 10 18 18 C 1.54896 * 104.19955 * 264.32722 * 17 13 12 19 19 C 1.54890 * 102.74459 * 322.05838 * 18 17 13 20 20 C 1.53879 * 110.03322 * 178.55740 * 13 12 10 21 21 H 0.96999 * 120.00079 * 359.97438 * 1 2 3 22 22 H 0.96991 * 120.00387 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.47218 * 62.13662 * 12 10 9 24 24 H 1.08998 * 109.47283 * 302.13638 * 12 10 9 25 25 H 0.96701 * 116.99428 * 180.02562 * 16 14 13 26 26 H 1.08998 * 110.49040 * 145.64928 * 17 13 12 27 27 H 1.09003 * 110.48614 * 23.00093 * 17 13 12 28 28 H 1.09003 * 110.75283 * 80.36916 * 18 17 13 29 29 H 1.08992 * 110.75813 * 203.74272 * 18 17 13 30 30 H 1.09004 * 110.48453 * 156.62257 * 19 18 17 31 31 H 1.09007 * 110.48360 * 279.25772 * 19 18 17 32 32 H 1.09005 * 110.03141 * 0.02562 * 20 13 12 33 33 H 1.08998 * 110.03553 * 238.57043 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 6 2.2371 -6.0253 0.0572 14 6 3.1175 -5.8957 1.2735 15 8 4.3195 -5.9261 1.1552 16 8 2.5660 -5.7466 2.4881 17 6 3.1009 -6.0432 -1.2208 18 6 2.3843 -7.0545 -2.1497 19 6 1.9101 -8.1492 -1.1618 20 6 1.4800 -7.3644 0.0947 21 1 -0.4850 0.8400 0.0004 22 1 0.3534 -2.3907 0.0005 23 1 0.6465 -4.9381 -0.9066 24 1 0.5884 -4.9037 0.8721 25 1 3.1712 -5.6672 3.2381 26 1 4.1112 -6.3835 -0.9937 27 1 3.1244 -5.0545 -1.6793 28 1 1.5336 -6.5874 -2.6460 29 1 3.0796 -7.4681 -2.8800 30 1 1.0646 -8.6976 -1.5772 31 1 2.7282 -8.8297 -0.9252 32 1 0.4049 -7.1862 0.0733 33 1 1.7493 -7.9205 0.9926 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040605419.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = -172.410939 kcal Electronic energy + Delta-G solvation = -17999.747311 eV Core-core repulsion = 15023.497997 eV Total energy + Delta-G solvation = -2976.249314 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.90851 -39.98226 -38.50453 -36.96816 -35.98352 -33.35173 -32.42406 -29.67417 -28.23066 -26.12685 -24.25036 -21.85295 -21.22710 -20.28956 -19.78782 -18.71148 -17.83149 -17.58226 -16.70495 -16.43683 -16.15250 -15.83337 -15.34063 -15.23986 -14.51113 -14.13363 -13.67820 -13.54513 -13.32450 -12.92448 -12.65858 -12.45940 -12.44651 -12.19287 -12.13210 -11.99565 -11.84966 -11.63842 -11.55068 -11.42676 -11.13342 -10.30340 -10.01611 -8.48713 -5.97039 1.35220 1.38080 1.39312 1.51677 2.03668 2.20651 2.28816 3.13008 3.18960 3.53858 3.63503 3.83907 4.25177 4.34265 4.40591 4.48623 4.57570 4.68522 4.78778 4.84150 4.89471 5.01866 5.13905 5.22927 5.33943 5.38555 5.42588 5.51268 5.70742 5.97555 6.57333 7.08443 7.10784 7.54046 8.10052 8.68583 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.034750 B = 0.006506 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.550456 B = 4302.486240 C = 4511.528584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.335 4.335 8 H 0.074 0.926 9 N -0.570 5.570 10 C 0.430 3.570 11 O -0.623 6.623 12 C -0.111 4.111 13 C -0.032 4.032 14 C 0.496 3.504 15 O -0.549 6.549 16 O -0.515 6.515 17 C -0.107 4.107 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.106 4.106 21 H 0.278 0.722 22 H 0.397 0.603 23 H 0.123 0.877 24 H 0.111 0.889 25 H 0.418 0.582 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -14.196 -0.456 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.814 3.186 4 H -0.196 1.196 5 H -0.193 1.193 6 H -0.202 1.202 7 C -0.464 4.464 8 H 0.092 0.908 9 N -0.206 5.206 10 C 0.218 3.782 11 O -0.510 6.510 12 C -0.151 4.151 13 C -0.033 4.033 14 C 0.339 3.661 15 O -0.439 6.439 16 O -0.327 6.327 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.144 4.144 21 H 0.088 0.912 22 H 0.231 0.769 23 H 0.141 0.859 24 H 0.129 0.871 25 H 0.278 0.722 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.476 -14.073 -0.804 14.312 hybrid contribution 0.727 1.411 0.720 1.743 sum -1.749 -12.662 -0.084 12.782 Atomic orbital electron populations 1.69657 1.06683 1.29323 1.50140 1.25985 0.96538 1.02242 0.96260 0.84980 0.77809 0.77157 0.78693 1.19551 1.19277 1.20219 1.19619 0.92525 0.84220 1.50054 0.90773 1.41928 1.09325 1.04658 1.64735 1.21009 0.88357 0.86494 0.82291 1.90590 1.15694 1.87917 1.56819 1.21708 0.97815 0.89044 1.06486 1.20996 0.94450 0.98100 0.89780 1.23624 0.87751 0.69730 0.84946 1.90595 1.18532 1.48008 1.86797 1.84466 1.45859 1.84576 1.17848 1.22375 0.98503 1.00147 0.93458 1.22565 1.00327 0.95551 0.97274 1.22384 1.01962 0.97029 0.93995 1.22297 1.01261 0.90893 0.99937 0.91213 0.76853 0.85929 0.87128 0.72221 0.92399 0.93195 0.90062 0.90321 0.88180 0.91545 0.87549 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 8 H 0.07 4.61 7.16 -2.91 -0.02 4.58 16 9 N -0.57 -29.30 5.29 -306.98 -1.62 -30.93 16 10 C 0.43 20.39 6.93 87.66 0.61 20.99 16 11 O -0.62 -34.69 12.61 3.12 0.04 -34.65 16 12 C -0.11 -3.65 4.39 29.85 0.13 -3.52 16 13 C -0.03 -1.00 0.59 -52.20 -0.03 -1.03 16 14 C 0.50 18.49 4.93 71.24 0.35 18.84 16 15 O -0.55 -24.65 15.91 25.29 0.40 -24.24 16 16 O -0.51 -15.94 13.21 -51.38 -0.68 -16.61 16 17 C -0.11 -3.61 5.03 31.67 0.16 -3.45 16 18 C -0.12 -2.69 6.91 31.89 0.22 -2.47 16 19 C -0.12 -2.08 6.83 31.67 0.22 -1.86 16 20 C -0.11 -2.23 6.10 31.32 0.19 -2.04 16 21 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 22 H 0.40 19.26 7.90 -92.72 -0.73 18.53 16 23 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 24 H 0.11 3.21 8.10 -2.39 -0.02 3.19 16 25 H 0.42 9.75 9.10 -74.06 -0.67 9.07 16 26 H 0.06 2.20 6.81 -2.39 -0.02 2.18 16 27 H 0.05 2.02 6.34 -2.39 -0.02 2.01 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.11 1.71 7.67 -2.38 -0.02 1.69 16 33 H 0.07 1.49 7.67 -2.39 -0.02 1.47 16 Total: -1.00 -74.43 277.59 3.32 -71.12 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.26 Total: 31.97 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 3.13 Total: 6.97 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.34 Total: -80.08 kcal Atomic # 8 Polarization: -75.27 SS G_CDS: -0.24 Total: -75.51 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.43 3.32 -71.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040605419.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.291 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds