Wall clock time and date at job start Mon Mar 30 2020 04:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47630 * 2 1 4 4 C 1.46497 * 120.00275 * 276.43920 * 3 2 1 5 5 C 1.50710 * 109.46870 * 269.99709 * 4 3 2 6 6 H 1.07992 * 119.99893 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99872 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00119 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99751 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47150 * 60.00234 * 9 7 5 11 11 H 1.48506 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47415 * 299.99892 * 9 7 5 13 13 C 1.34775 * 120.00056 * 96.43237 * 3 2 1 14 14 O 1.21287 * 120.00173 * 176.70366 * 13 3 2 15 15 C 1.50700 * 120.00025 * 356.98259 * 13 3 2 16 16 C 1.50703 * 115.54775 * 298.11059 * 15 13 3 17 17 O 1.20833 * 120.00010 * 125.53505 * 16 15 13 18 18 O 1.34231 * 120.00085 * 305.53277 * 16 15 13 19 19 C 1.52997 * 117.50146 * 152.43908 * 15 13 3 20 20 C 1.53002 * 117.50177 * 83.77754 * 15 13 3 21 21 H 1.08995 * 109.47590 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.46837 * 300.00299 * 1 2 3 23 23 H 1.09000 * 109.46865 * 59.99548 * 1 2 3 24 24 H 1.09002 * 109.47041 * 240.00104 * 2 1 3 25 25 H 1.09000 * 109.46865 * 120.00452 * 2 1 3 26 26 H 1.09000 * 109.47230 * 29.99070 * 4 3 2 27 27 H 1.09002 * 109.47773 * 150.00175 * 4 3 2 28 28 H 0.96997 * 119.99910 * 179.97438 * 8 7 5 29 29 H 0.96698 * 116.99924 * 185.02736 * 18 16 15 30 30 H 1.08996 * 117.49719 * 0.02562 * 19 15 13 31 31 H 1.09004 * 117.50129 * 145.02147 * 19 15 13 32 32 H 1.09001 * 117.50074 * 214.98317 * 20 15 13 33 33 H 1.09002 * 117.49401 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1285 2.1192 -1.2607 5 6 3.4975 1.9015 -1.8522 6 1 4.2138 1.2764 -1.3401 7 6 3.8352 2.5006 -3.0472 8 7 2.9627 3.2615 -3.6711 9 14 5.5322 2.2313 -3.7801 10 1 5.7375 0.7827 -4.0343 11 1 5.6435 2.9784 -5.0587 12 1 6.5646 2.7184 -2.8303 13 6 2.3664 1.9728 1.1598 14 8 2.8270 3.0948 1.1540 15 6 2.1891 1.2380 2.4635 16 6 0.7710 0.8654 2.8119 17 8 0.4922 -0.2834 3.0620 18 8 -0.1824 1.8098 2.8446 19 6 3.1260 1.6068 3.6155 20 6 3.2975 0.2718 2.8864 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.3706 1.7624 -1.9580 27 1 1.9785 3.1825 -1.0736 28 1 3.2004 3.6832 -4.5117 29 1 -1.0601 1.5374 3.1454 30 1 3.8703 2.3812 3.4305 31 1 2.7168 1.5796 4.6255 32 1 3.0011 -0.6331 3.4169 33 1 4.1548 0.1674 2.2213 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050292456.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:18 Heat of formation + Delta-G solvation = -122.324531 kcal Electronic energy + Delta-G solvation = -18134.690537 eV Core-core repulsion = 15160.613133 eV Total energy + Delta-G solvation = -2974.077404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.11915 -40.40347 -37.76784 -37.23455 -36.66885 -34.87302 -31.71981 -29.53726 -27.16314 -25.23973 -24.37271 -23.54295 -22.48347 -20.29064 -19.13852 -18.59503 -18.46965 -17.63309 -16.94868 -16.64900 -16.15841 -15.80454 -15.24465 -15.01752 -14.62207 -14.27528 -13.97759 -13.62602 -13.35247 -13.15762 -12.76146 -12.69698 -12.64478 -12.56037 -12.26803 -12.23132 -12.08933 -11.77588 -11.71026 -11.54014 -10.73063 -10.64690 -9.57205 -8.23377 -6.38202 0.91324 1.37030 1.41507 1.46101 1.50133 1.87007 2.06721 2.39874 2.69264 3.06457 3.38591 3.54892 3.68159 4.01382 4.10567 4.27584 4.44410 4.54310 4.59957 4.79634 4.82405 4.84185 4.97006 5.06455 5.13698 5.22881 5.43362 5.52279 5.77348 6.02838 6.58717 6.70366 6.88898 7.19019 7.35544 8.84156 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.007415 C = 0.006893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.727971 B = 3775.227645 C = 4061.217322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.592 5.592 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.542 3.458 14 O -0.577 6.577 15 C -0.199 4.199 16 C 0.541 3.459 17 O -0.511 6.511 18 O -0.510 6.510 19 C -0.111 4.111 20 C -0.110 4.110 21 H 0.091 0.909 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.025 0.975 27 H -0.001 1.001 28 H 0.268 0.732 29 H 0.432 0.568 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 -8.785 13.510 16.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.322 5.322 4 C 0.142 3.858 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.201 1.201 13 C 0.329 3.671 14 O -0.457 6.457 15 C -0.203 4.203 16 C 0.383 3.617 17 O -0.400 6.400 18 O -0.324 6.324 19 C -0.148 4.148 20 C -0.147 4.147 21 H 0.110 0.890 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.043 0.957 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.295 0.705 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.353 -8.303 13.226 15.972 hybrid contribution -0.057 0.269 -0.748 0.797 sum -3.410 -8.034 12.478 15.228 Atomic orbital electron populations 1.22188 0.95058 1.03300 1.01376 1.21754 0.95179 0.81651 1.03983 1.48200 1.62304 1.14796 1.06904 1.18784 0.96314 0.90778 0.79928 1.21641 0.99713 1.30560 1.06327 0.92593 1.25872 1.01671 0.94367 0.97197 1.70046 1.36895 1.32322 1.17484 0.85448 0.78862 0.78963 0.77430 1.18491 1.20359 1.20115 1.19468 0.77793 0.85456 0.84381 1.90652 1.46593 1.21116 1.87323 1.20967 0.90069 1.11771 0.97528 1.21275 0.85832 0.82576 0.72021 1.90706 1.82184 1.20538 1.46525 1.84576 1.24891 1.43474 1.79504 1.23292 0.97754 0.99030 0.94706 1.23376 0.94816 0.95134 1.01338 0.88984 0.93412 0.93328 0.90153 0.88823 0.95690 0.98296 0.92338 0.70516 0.87429 0.84342 0.84100 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 9.78 71.98 0.70 -4.10 16 2 C 0.10 3.33 5.64 86.38 0.49 3.81 16 3 N -0.59 -26.25 2.46 -826.15 -2.03 -28.28 16 4 C 0.26 14.44 5.16 85.64 0.44 14.89 16 5 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16 6 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 9 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.54 23.53 6.96 87.66 0.61 24.14 16 14 O -0.58 -30.48 16.21 -3.05 -0.05 -30.53 16 15 C -0.20 -6.14 1.32 -53.67 -0.07 -6.21 16 16 C 0.54 14.84 4.44 71.24 0.32 15.16 16 17 O -0.51 -13.93 16.53 21.94 0.36 -13.57 16 18 O -0.51 -12.56 12.74 -51.43 -0.66 -13.22 16 19 C -0.11 -2.66 9.75 30.62 0.30 -2.36 16 20 C -0.11 -2.56 8.92 30.62 0.27 -2.29 16 21 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 22 H 0.05 1.39 4.96 -2.38 -0.01 1.38 16 23 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 24 H 0.08 2.81 8.12 -2.39 -0.02 2.79 16 25 H 0.09 2.82 5.49 -2.39 -0.01 2.80 16 26 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 27 H 0.00 -0.07 7.47 -2.39 -0.02 -0.09 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.43 5.63 9.10 -74.06 -0.67 4.96 16 30 H 0.11 2.89 7.93 -2.39 -0.02 2.87 16 31 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.14 2.58 7.82 -2.39 -0.02 2.56 16 33 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -75.46 286.45 4.16 -71.30 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.46 Total: 10.79 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 3.76 Total: 12.71 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -1.75 Total: -84.29 kcal Atomic # 8 Polarization: -56.97 SS G_CDS: -0.34 Total: -57.32 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.46 4.16 -71.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050292456.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.025 kcal (2) G-P(sol) polarization free energy of solvation -75.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds