Wall clock time and date at job start Mon Mar 30 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.45754 * 117.94813 * 89.99792 * 11 10 9 13 13 C 1.52920 * 110.48893 * 160.92372 * 12 11 10 14 14 H 1.09003 * 109.60344 * 290.99560 * 13 12 11 15 15 C 1.50704 * 109.60193 * 170.51356 * 13 12 11 16 16 O 1.20816 * 120.00088 * 359.97438 * 15 13 12 17 17 O 1.34236 * 119.99796 * 179.97438 * 15 13 12 18 18 C 1.53340 * 108.67465 * 50.75237 * 13 12 11 19 19 C 1.53070 * 108.42579 * 292.46825 * 18 13 12 20 20 C 1.33355 * 117.94872 * 269.73696 * 11 10 9 21 21 O 1.21282 * 118.24457 * 2.22136 * 20 11 10 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 27 27 H 1.08992 * 109.30131 * 281.23716 * 12 11 10 28 28 H 1.09005 * 109.29825 * 40.81753 * 12 11 10 29 29 H 0.96692 * 116.99899 * 179.97438 * 17 15 13 30 30 H 1.08996 * 109.67016 * 52.20583 * 18 13 12 31 31 H 1.08998 * 109.67612 * 172.73596 * 18 13 12 32 32 H 1.09005 * 109.39653 * 169.02522 * 19 18 13 33 33 H 1.08999 * 109.39904 * 288.85677 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1709 -5.5227 -1.2861 13 6 0.8530 -7.0097 -1.1239 14 1 1.7636 -7.5528 -0.8708 15 6 0.2807 -7.5475 -2.4101 16 8 0.1401 -6.8160 -3.3613 17 8 -0.0730 -8.8394 -2.4988 18 6 -0.1733 -7.1722 0.0037 19 6 0.4962 -6.7897 1.3261 20 6 1.2055 -5.4744 1.1794 21 8 1.5111 -4.8719 2.1867 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8720 -3.6043 -0.8895 26 1 2.8721 -3.6042 0.8905 27 1 0.3011 -5.0112 -1.6981 28 1 2.0125 -5.4097 -1.9696 29 1 -0.4358 -9.1382 -3.3439 30 1 -1.0257 -6.5180 -0.1789 31 1 -0.5084 -8.2085 0.0484 32 1 -0.2614 -6.7104 2.1057 33 1 1.2197 -7.5572 1.6008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050919652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:42 Heat of formation + Delta-G solvation = -142.951669 kcal Electronic energy + Delta-G solvation = -17510.693709 eV Core-core repulsion = 14535.721845 eV Total energy + Delta-G solvation = -2974.971864 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98022 -39.78268 -36.61845 -36.06309 -34.80619 -32.95140 -30.19309 -29.30902 -25.43425 -24.41427 -23.40295 -21.80546 -20.98206 -18.62544 -18.09489 -17.24756 -16.70139 -16.36057 -15.93792 -15.64930 -14.98937 -14.14744 -13.89433 -13.64641 -13.61805 -13.28877 -12.80245 -12.26516 -12.17780 -11.90115 -11.79004 -11.68668 -11.33910 -11.19170 -10.78644 -10.69167 -10.27375 -10.02485 -9.99037 -9.37526 -8.61302 -8.28238 -8.15877 -6.32839 -4.01508 1.90881 2.58783 2.97335 3.43500 3.48359 3.50462 3.68486 4.24539 4.38236 4.57248 4.59520 4.70564 5.00062 5.13777 5.25876 5.45727 5.46600 5.63393 5.65150 5.72907 5.88942 6.06458 6.20023 6.41928 6.67306 6.77112 7.40166 7.52677 7.59269 7.88086 8.21174 8.48106 8.55343 8.90766 9.71113 11.08223 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031899 B = 0.005701 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.546606 B = 4910.115802 C = 5444.594586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 1.071 2.929 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.600 4.600 8 H 0.050 0.950 9 C 0.001 3.999 10 C 0.119 3.881 11 N -0.600 5.600 12 C 0.129 3.871 13 C -0.097 4.097 14 H 0.119 0.881 15 C 0.490 3.510 16 O -0.505 6.505 17 O -0.515 6.515 18 C -0.114 4.114 19 C -0.131 4.131 20 C 0.504 3.496 21 O -0.546 6.546 22 H 0.268 0.732 23 H 0.014 0.986 24 H 0.006 0.994 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.411 0.589 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -19.418 -3.809 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.188 4.188 3 Si 0.899 3.101 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.639 4.639 8 H 0.068 0.932 9 C -0.037 4.037 10 C -0.002 4.002 11 N -0.332 5.332 12 C 0.005 3.995 13 C -0.116 4.116 14 H 0.137 0.863 15 C 0.331 3.669 16 O -0.392 6.392 17 O -0.327 6.327 18 C -0.152 4.152 19 C -0.171 4.171 20 C 0.291 3.709 21 O -0.423 6.423 22 H 0.078 0.922 23 H 0.032 0.968 24 H 0.025 0.975 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.270 0.730 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.353 -17.123 -3.173 17.418 hybrid contribution -0.068 -1.966 -0.763 2.110 sum 0.285 -19.088 -3.936 19.492 Atomic orbital electron populations 1.70770 1.06916 1.30573 1.46512 1.25856 0.96534 1.02727 0.93691 0.83524 0.74858 0.75227 0.76499 1.20780 1.21441 1.21385 1.21912 0.94259 0.91722 1.56034 0.93185 1.19480 0.95061 0.92814 0.96344 1.21806 0.95298 0.81201 1.01852 1.47507 1.56829 1.24270 1.04609 1.21148 1.02838 0.89509 0.85974 1.21313 1.01311 0.97811 0.91171 0.86343 1.23065 0.74429 0.79621 0.89762 1.90779 1.50440 1.58516 1.39471 1.84505 1.75893 1.28344 1.43954 1.21677 0.97442 1.03740 0.92328 1.21650 1.01203 0.95593 0.98612 1.20035 0.80116 0.87388 0.83334 1.90752 1.53968 1.62068 1.35557 0.92162 0.96812 0.97545 0.91629 0.90311 0.90278 0.89827 0.72959 0.90190 0.89211 0.87682 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.95 13.65 55.43 0.76 -28.20 16 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 3 Si 1.07 26.02 29.90 -169.99 -5.08 20.94 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.60 -17.70 9.11 -34.44 -0.31 -18.02 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.00 0.02 4.60 -27.88 -0.13 -0.11 16 10 C 0.12 2.59 5.14 -4.04 -0.02 2.57 16 11 N -0.60 -10.66 2.81 -174.97 -0.49 -11.15 16 12 C 0.13 1.84 5.13 -4.49 -0.02 1.81 16 13 C -0.10 -0.99 2.70 -91.63 -0.25 -1.24 16 14 H 0.12 0.99 8.12 -51.93 -0.42 0.57 16 15 C 0.49 5.04 7.62 36.01 0.27 5.32 16 16 O -0.51 -7.01 16.58 -18.74 -0.31 -7.32 16 17 O -0.51 -3.66 13.25 -39.27 -0.52 -4.18 16 18 C -0.11 -1.09 5.30 -26.52 -0.14 -1.23 16 19 C -0.13 -1.50 6.03 -28.11 -0.17 -1.67 16 20 C 0.50 8.90 7.46 -11.88 -0.09 8.81 16 21 O -0.55 -12.34 16.21 5.56 0.09 -12.25 16 22 H 0.27 8.55 7.22 -40.82 -0.29 8.26 16 23 H 0.01 0.40 8.01 -51.93 -0.42 -0.01 16 24 H 0.01 0.17 8.01 -51.93 -0.42 -0.24 16 25 H 0.07 1.32 7.86 -51.93 -0.41 0.91 16 26 H 0.08 1.83 7.19 -51.93 -0.37 1.46 16 27 H 0.08 1.26 7.77 -51.93 -0.40 0.85 16 28 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 29 H 0.41 1.28 9.10 45.56 0.41 1.70 16 30 H 0.08 0.84 8.13 -51.93 -0.42 0.42 16 31 H 0.09 0.64 7.99 -51.93 -0.42 0.22 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 283.65 15.07 4.27 4.27 Total: -1.00 -37.25 283.65 -5.85 -43.11 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -3.61 Total: -1.85 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.95 Total: -3.36 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.26 Total: -39.35 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.74 Total: -23.76 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -37.25 -5.85 -43.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050919652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.846 kcal (2) G-P(sol) polarization free energy of solvation -37.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds