Wall clock time and date at job start Mon Mar 30 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.45754 * 117.94813 * 89.99792 * 11 10 9 13 13 C 1.52920 * 110.48893 * 160.92372 * 12 11 10 14 14 H 1.09003 * 109.60344 * 290.99560 * 13 12 11 15 15 C 1.50704 * 109.60193 * 170.51356 * 13 12 11 16 16 O 1.20816 * 120.00088 * 359.97438 * 15 13 12 17 17 O 1.34236 * 119.99796 * 179.97438 * 15 13 12 18 18 C 1.53340 * 108.67465 * 50.75237 * 13 12 11 19 19 C 1.53070 * 108.42579 * 292.46825 * 18 13 12 20 20 C 1.33355 * 117.94872 * 269.73696 * 11 10 9 21 21 O 1.21282 * 118.24457 * 2.22136 * 20 11 10 22 22 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 24 24 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 25 25 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 26 26 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 27 27 H 1.08992 * 109.30131 * 281.23716 * 12 11 10 28 28 H 1.09005 * 109.29825 * 40.81753 * 12 11 10 29 29 H 0.96692 * 116.99899 * 179.97438 * 17 15 13 30 30 H 1.08996 * 109.67016 * 52.20583 * 18 13 12 31 31 H 1.08998 * 109.67612 * 172.73596 * 18 13 12 32 32 H 1.09005 * 109.39653 * 169.02522 * 19 18 13 33 33 H 1.08999 * 109.39904 * 288.85677 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 1.1709 -5.5227 -1.2861 13 6 0.8530 -7.0097 -1.1239 14 1 1.7636 -7.5528 -0.8708 15 6 0.2807 -7.5475 -2.4101 16 8 0.1401 -6.8160 -3.3613 17 8 -0.0730 -8.8394 -2.4988 18 6 -0.1733 -7.1722 0.0037 19 6 0.4962 -6.7897 1.3261 20 6 1.2055 -5.4744 1.1794 21 8 1.5111 -4.8719 2.1867 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6248 -2.5571 -0.8896 25 1 2.8720 -3.6043 -0.8895 26 1 2.8721 -3.6042 0.8905 27 1 0.3011 -5.0112 -1.6981 28 1 2.0125 -5.4097 -1.9696 29 1 -0.4358 -9.1382 -3.3439 30 1 -1.0257 -6.5180 -0.1789 31 1 -0.5084 -8.2085 0.0484 32 1 -0.2614 -6.7104 2.1057 33 1 1.2197 -7.5572 1.6008 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050919652.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:42 Heat of formation + Delta-G solvation = -170.878188 kcal Electronic energy + Delta-G solvation = -17511.904694 eV Core-core repulsion = 14535.721845 eV Total energy + Delta-G solvation = -2976.182849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.01277 -40.94051 -37.68882 -37.06339 -36.47206 -34.84423 -31.38594 -31.11717 -26.93445 -25.99033 -24.62592 -23.53894 -22.10724 -19.67752 -19.12308 -18.98184 -18.11141 -17.59597 -17.22100 -16.65420 -16.29142 -15.66616 -15.33184 -15.16760 -14.85474 -14.53121 -14.42341 -14.12114 -13.70865 -13.15486 -12.93524 -12.68310 -12.62266 -12.48397 -12.29085 -12.02254 -11.98116 -11.90776 -11.55176 -11.00096 -10.63778 -10.59320 -9.77865 -8.75763 -6.46252 1.12605 1.50292 1.57152 1.60592 1.70259 1.79672 2.25463 2.55878 3.11313 3.29464 3.50620 3.60589 3.78101 4.13704 4.21251 4.29530 4.43281 4.44668 4.50704 4.65328 4.74775 4.80592 4.89650 5.01651 5.04898 5.26517 5.38957 5.58359 5.91318 6.10106 6.44732 6.48250 6.95998 7.13049 7.37655 8.64851 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031899 B = 0.005701 C = 0.005141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.546606 B = 4910.115802 C = 5444.594586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.040 4.040 3 Si 1.123 2.877 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.619 4.619 8 H 0.058 0.942 9 C 0.010 3.990 10 C 0.132 3.868 11 N -0.600 5.600 12 C 0.125 3.875 13 C -0.089 4.089 14 H 0.150 0.850 15 C 0.504 3.496 16 O -0.549 6.549 17 O -0.499 6.499 18 C -0.106 4.106 19 C -0.117 4.117 20 C 0.493 3.507 21 O -0.605 6.605 22 H 0.251 0.749 23 H -0.027 1.027 24 H -0.009 1.009 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.091 0.909 29 H 0.432 0.568 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 -21.473 -4.322 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.943 3.057 4 H -0.208 1.208 5 H -0.187 1.187 6 H -0.195 1.195 7 C -0.658 4.658 8 H 0.076 0.924 9 C -0.028 4.028 10 C 0.010 3.990 11 N -0.331 5.331 12 C 0.002 3.998 13 C -0.108 4.108 14 H 0.168 0.832 15 C 0.346 3.654 16 O -0.439 6.439 17 O -0.313 6.313 18 C -0.144 4.144 19 C -0.156 4.156 20 C 0.283 3.717 21 O -0.487 6.487 22 H 0.060 0.940 23 H -0.009 1.009 24 H 0.009 0.991 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.294 0.706 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.170 -19.268 -3.720 19.659 hybrid contribution -0.368 -1.405 -0.614 1.576 sum 0.802 -20.673 -4.333 21.138 Atomic orbital electron populations 1.70920 1.08108 1.29553 1.48684 1.27613 0.96550 1.07189 0.92357 0.82888 0.74086 0.70524 0.78236 1.20780 1.18661 1.19522 1.22383 0.94953 0.92953 1.55469 0.92396 1.19328 0.95273 0.94750 0.93496 1.21344 0.94142 0.81713 1.01842 1.47503 1.56246 1.22912 1.06433 1.21248 1.02127 0.92368 0.84039 1.21230 1.03026 0.94809 0.91707 0.83244 1.22870 0.73471 0.80163 0.88870 1.90786 1.52409 1.59823 1.40910 1.84442 1.75238 1.26152 1.45452 1.21691 0.96369 1.05727 0.90571 1.21683 1.01639 0.92235 1.00088 1.21328 0.79130 0.89109 0.82085 1.90722 1.56322 1.64211 1.37420 0.93989 1.00856 0.99124 0.89696 0.92074 0.92680 0.89116 0.70586 0.91657 0.85149 0.86896 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.29 13.65 21.45 0.29 -61.00 16 2 C -0.04 -2.45 5.46 84.65 0.46 -1.98 16 3 Si 1.12 52.14 29.90 68.60 2.05 54.20 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.62 -37.41 9.11 25.60 0.23 -37.18 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.01 0.54 4.60 29.85 0.14 0.67 16 10 C 0.13 5.94 5.14 86.38 0.44 6.38 16 11 N -0.60 -21.55 2.81 -826.66 -2.32 -23.87 16 12 C 0.12 3.49 5.13 86.49 0.44 3.94 16 13 C -0.09 -1.56 2.70 -11.45 -0.03 -1.59 16 14 H 0.15 1.81 8.12 -2.39 -0.02 1.79 16 15 C 0.50 8.97 7.62 71.24 0.54 9.52 16 16 O -0.55 -14.60 16.58 21.99 0.36 -14.24 16 17 O -0.50 -5.04 13.25 -51.47 -0.68 -5.72 16 18 C -0.11 -1.66 5.30 30.73 0.16 -1.50 16 19 C -0.12 -2.38 6.03 29.70 0.18 -2.20 16 20 C 0.49 17.39 7.46 87.71 0.65 18.04 16 21 O -0.60 -28.23 16.21 -3.04 -0.05 -28.28 16 22 H 0.25 16.86 7.22 -92.71 -0.67 16.19 16 23 H -0.03 -1.72 8.01 -2.39 -0.02 -1.74 16 24 H -0.01 -0.56 8.01 -2.39 -0.02 -0.58 16 25 H 0.08 3.43 7.86 -2.39 -0.02 3.42 16 26 H 0.06 2.95 7.19 -2.39 -0.02 2.94 16 27 H 0.05 1.81 7.77 -2.39 -0.02 1.79 16 28 H 0.09 2.39 7.93 -2.38 -0.02 2.37 16 29 H 0.43 1.04 9.10 -74.06 -0.67 0.36 16 30 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.13 1.12 7.99 -2.39 -0.02 1.10 16 32 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -85.71 283.65 3.43 -82.28 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 0.55 Total: 2.54 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 3.23 Total: -5.90 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.03 Total: -84.87 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.37 Total: -48.24 kcal Atomic # 14 Polarization: 52.14 SS G_CDS: 2.05 Total: 54.20 kcal Total: -85.71 3.43 -82.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050919652.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.597 kcal (2) G-P(sol) polarization free energy of solvation -85.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds