Wall clock time and date at job start Mon Mar 30 2020 03:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38609 * 119.78109 * 2 1 4 4 C 1.37834 * 120.37402 * 179.71843 * 3 2 1 5 5 C 1.39693 * 119.92898 * 0.55654 * 4 3 2 6 6 C 1.43200 * 120.21280 * 179.74768 * 5 4 3 7 7 N 4.80173 * 137.11218 * 359.97438 * 3 1 2 8 8 C 1.40524 * 119.57158 * 359.46929 * 5 4 3 9 9 N 1.38702 * 120.18829 * 180.27421 * 8 5 4 10 10 C 1.36799 * 119.99887 * 90.00034 * 9 8 5 11 11 H 1.07999 * 119.99686 * 189.00618 * 10 9 8 12 12 C 1.38846 * 119.99817 * 9.00216 * 10 9 8 13 13 N 1.31542 * 120.00082 * 17.60401 * 12 10 9 14 14 Si 1.86801 * 119.99705 * 197.60065 * 12 10 9 15 15 H 1.48502 * 109.47236 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46944 * 120.00116 * 14 12 10 17 17 H 1.48496 * 109.47278 * 240.00238 * 14 12 10 18 18 C 1.46499 * 120.00121 * 270.00320 * 9 8 5 19 19 C 1.47199 * 109.47384 * 95.50939 * 18 9 8 20 20 N 6.34998 * 151.36528 * 218.70617 * 2 1 3 21 21 C 1.37966 * 119.77809 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47056 * 269.98374 * 1 2 3 23 23 H 1.09002 * 109.46547 * 29.97697 * 1 2 3 24 24 H 1.08996 * 109.47114 * 149.97306 * 1 2 3 25 25 H 1.08001 * 119.81825 * 0.02562 * 3 2 1 26 26 H 1.08005 * 120.03906 * 180.28225 * 4 3 2 27 27 H 0.97007 * 119.99825 * 179.97438 * 13 12 10 28 28 H 1.08994 * 109.46982 * 215.50861 * 18 9 8 29 29 H 1.09002 * 109.46640 * 335.50750 * 18 9 8 30 30 H 1.07994 * 119.97443 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2030 0.0000 4 6 3.5737 1.2173 0.0058 5 6 4.2832 0.0140 0.0000 6 6 5.7152 0.0217 0.0006 7 7 6.8512 0.0278 0.0015 8 6 3.5827 -1.2042 -0.0004 9 7 4.2742 -2.4065 -0.0004 10 6 4.6148 -2.9996 1.1843 11 1 5.2753 -3.8541 1.1901 12 6 4.1116 -2.5029 2.3793 13 7 3.0621 -1.7099 2.3719 14 14 4.9249 -2.9609 3.9974 15 1 6.0786 -3.8583 3.7349 16 1 5.4006 -1.7298 4.6781 17 1 3.9423 -3.6582 4.8653 18 6 4.6399 -3.0412 -1.2691 19 6 6.0174 -2.6651 -1.6268 20 7 7.0804 -2.3747 -1.9029 21 6 2.1922 -1.1975 -0.0005 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3632 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6490 2.1345 0.0004 26 1 4.1047 2.1578 0.0104 27 1 2.7102 -1.3632 3.2068 28 1 4.5743 -4.1242 -1.1657 29 1 3.9577 -2.7088 -2.0515 30 1 1.6482 -2.1304 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051597216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:26 Heat of formation + Delta-G solvation = 106.186496 kcal Electronic energy + Delta-G solvation = -16701.243227 eV Core-core repulsion = 14076.676475 eV Total energy + Delta-G solvation = -2624.566752 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.00917 -36.41674 -35.42813 -35.00306 -31.94732 -31.60708 -29.50354 -26.97097 -26.75638 -23.91267 -21.70258 -20.79648 -18.16853 -17.36571 -16.85496 -15.49051 -14.72179 -14.52069 -13.98572 -13.85668 -13.38724 -13.15097 -12.86856 -12.62874 -12.30380 -12.17031 -12.03327 -11.89111 -11.42536 -11.37193 -11.10240 -10.94506 -10.85818 -10.64311 -10.58899 -10.20147 -10.07960 -9.18690 -7.92945 -7.66667 -7.53274 -5.93640 -3.58740 1.79367 2.36004 3.24732 3.34254 3.35885 3.46086 3.54208 3.72530 3.94664 4.30123 4.76982 4.81133 4.97759 5.08909 5.23659 5.51388 5.66708 5.83611 5.91579 6.01322 6.09162 6.11083 6.30015 6.44350 6.65282 6.87389 7.06476 7.32652 7.47950 7.55522 7.64793 7.97234 8.33442 8.53728 8.91826 9.38225 9.76666 10.93523 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.013175 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.305306 B = 2124.765487 C = 2928.361293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.074 4.074 3 C -0.146 4.146 4 C -0.080 4.080 5 C -0.074 4.074 6 C 0.276 3.724 7 N -0.451 5.451 8 C 0.315 3.685 9 N -0.556 5.556 10 C -0.280 4.280 11 H 0.087 0.913 12 C 0.017 3.983 13 N -0.879 5.879 14 Si 0.905 3.095 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.286 1.286 18 C 0.235 3.765 19 C 0.183 3.817 20 N -0.451 5.451 21 C -0.052 4.052 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.262 0.738 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 1.534 -4.987 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.076 4.076 3 C -0.165 4.165 4 C -0.101 4.101 5 C -0.080 4.080 6 C -0.038 4.038 7 N -0.127 5.127 8 C 0.217 3.783 9 N -0.273 5.273 10 C -0.406 4.406 11 H 0.105 0.895 12 C -0.183 4.183 13 N -0.520 5.520 14 Si 0.734 3.266 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.212 1.212 18 C 0.105 3.895 19 C -0.137 4.137 20 N -0.130 5.130 21 C -0.073 4.073 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.113 0.887 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.688 1.984 -5.189 7.951 hybrid contribution -0.288 -0.189 1.487 1.527 sum -5.976 1.795 -3.702 7.255 Atomic orbital electron populations 1.20705 0.92288 1.01477 1.01802 1.19687 0.95099 0.93120 0.99658 1.20484 0.93183 0.96957 1.05871 1.20644 0.94063 0.95385 1.00041 1.16766 0.84186 0.95335 1.11737 1.25726 0.92864 0.92487 0.92767 1.81088 1.12452 1.08664 1.10545 1.16892 0.89747 0.83840 0.87783 1.41336 1.63515 1.20656 1.01769 1.19251 1.25542 1.13884 0.81915 0.89505 1.24811 0.96453 0.98841 0.98238 1.69859 1.20612 1.35200 1.26320 0.86173 0.79138 0.77999 0.83275 1.20146 1.21268 1.21249 1.18571 0.83250 0.99182 0.88488 1.31442 0.96740 0.93146 0.92410 1.81045 1.13193 1.09045 1.09744 1.20973 0.93080 0.96662 0.96563 0.91634 0.92592 0.92139 0.87109 0.87200 0.92678 0.87816 0.88675 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.00 36.01 0.36 -0.99 16 2 C -0.07 -1.20 5.88 -104.58 -0.62 -1.82 16 3 C -0.15 -2.34 9.67 -39.59 -0.38 -2.73 16 4 C -0.08 -1.43 9.75 -39.19 -0.38 -1.82 16 5 C -0.07 -1.55 5.76 -106.57 -0.61 -2.16 16 6 C 0.28 6.42 13.55 -22.47 -0.30 6.12 16 7 N -0.45 -11.25 18.41 41.84 0.77 -10.48 16 8 C 0.31 6.51 3.12 -83.59 -0.26 6.25 16 9 N -0.56 -11.80 1.91 -116.00 -0.22 -12.02 16 10 C -0.28 -6.73 9.70 -15.11 -0.15 -6.88 16 11 H 0.09 2.09 7.89 -52.49 -0.41 1.68 16 12 C 0.02 0.42 5.26 -17.45 -0.09 0.33 16 13 N -0.88 -21.71 9.69 55.49 0.54 -21.17 16 14 Si 0.91 20.84 29.59 -169.99 -5.03 15.81 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 18 C 0.23 3.96 6.14 -6.83 -0.04 3.92 16 19 C 0.18 3.66 14.44 -20.76 -0.30 3.36 16 20 N -0.45 -10.14 18.41 42.15 0.78 -9.36 16 21 C -0.05 -0.97 7.56 -39.38 -0.30 -1.27 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 24 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 25 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 26 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 28 H 0.10 1.49 8.08 -51.93 -0.42 1.08 16 29 H 0.10 1.28 8.00 -51.93 -0.42 0.86 16 30 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 280.92 15.07 4.23 4.23 Total: -1.00 -29.59 280.92 -4.92 -34.51 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -2.91 Total: -3.85 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -3.08 Total: 2.32 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 1.86 Total: -53.03 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.59 -4.92 -34.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051597216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.696 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds