Wall clock time and date at job start Mon Mar 30 2020 03:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38609 * 119.78109 * 2 1 4 4 C 1.37834 * 120.37402 * 179.71843 * 3 2 1 5 5 C 1.39693 * 119.92898 * 0.55654 * 4 3 2 6 6 C 1.43200 * 120.21280 * 179.74768 * 5 4 3 7 7 N 4.80173 * 137.11218 * 359.97438 * 3 1 2 8 8 C 1.40524 * 119.57158 * 359.46929 * 5 4 3 9 9 N 1.38702 * 120.18829 * 180.27421 * 8 5 4 10 10 C 1.36799 * 119.99887 * 90.00034 * 9 8 5 11 11 H 1.07999 * 119.99686 * 189.00618 * 10 9 8 12 12 C 1.38846 * 119.99817 * 9.00216 * 10 9 8 13 13 N 1.31542 * 120.00082 * 17.60401 * 12 10 9 14 14 Si 1.86801 * 119.99705 * 197.60065 * 12 10 9 15 15 H 1.48502 * 109.47236 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46944 * 120.00116 * 14 12 10 17 17 H 1.48496 * 109.47278 * 240.00238 * 14 12 10 18 18 C 1.46499 * 120.00121 * 270.00320 * 9 8 5 19 19 C 1.47199 * 109.47384 * 95.50939 * 18 9 8 20 20 N 6.34998 * 151.36528 * 218.70617 * 2 1 3 21 21 C 1.37966 * 119.77809 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.47056 * 269.98374 * 1 2 3 23 23 H 1.09002 * 109.46547 * 29.97697 * 1 2 3 24 24 H 1.08996 * 109.47114 * 149.97306 * 1 2 3 25 25 H 1.08001 * 119.81825 * 0.02562 * 3 2 1 26 26 H 1.08005 * 120.03906 * 180.28225 * 4 3 2 27 27 H 0.97007 * 119.99825 * 179.97438 * 13 12 10 28 28 H 1.08994 * 109.46982 * 215.50861 * 18 9 8 29 29 H 1.09002 * 109.46640 * 335.50750 * 18 9 8 30 30 H 1.07994 * 119.97443 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2030 0.0000 4 6 3.5737 1.2173 0.0058 5 6 4.2832 0.0140 0.0000 6 6 5.7152 0.0217 0.0006 7 7 6.8512 0.0278 0.0015 8 6 3.5827 -1.2042 -0.0004 9 7 4.2742 -2.4065 -0.0004 10 6 4.6148 -2.9996 1.1843 11 1 5.2753 -3.8541 1.1901 12 6 4.1116 -2.5029 2.3793 13 7 3.0621 -1.7099 2.3719 14 14 4.9249 -2.9609 3.9974 15 1 6.0786 -3.8583 3.7349 16 1 5.4006 -1.7298 4.6781 17 1 3.9423 -3.6582 4.8653 18 6 4.6399 -3.0412 -1.2691 19 6 6.0174 -2.6651 -1.6268 20 7 7.0804 -2.3747 -1.9029 21 6 2.1922 -1.1975 -0.0005 22 1 -0.3633 -0.0003 1.0276 23 1 -0.3632 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.6490 2.1345 0.0004 26 1 4.1047 2.1578 0.0104 27 1 2.7102 -1.3632 3.2068 28 1 4.5743 -4.1242 -1.1657 29 1 3.9577 -2.7088 -2.0515 30 1 1.6482 -2.1304 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051597216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:26 Heat of formation + Delta-G solvation = 90.905431 kcal Electronic energy + Delta-G solvation = -16701.905864 eV Core-core repulsion = 14076.676475 eV Total energy + Delta-G solvation = -2625.229389 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47439 -37.93313 -37.21505 -36.61864 -33.57049 -33.09922 -30.91672 -28.55331 -28.03723 -25.54691 -23.07207 -22.32865 -19.78727 -18.94127 -18.34448 -17.08965 -16.18216 -16.15839 -15.69741 -15.28385 -14.87822 -14.60687 -14.43773 -14.02114 -13.87013 -13.78379 -13.59340 -13.45937 -13.14374 -12.85626 -12.64719 -12.55522 -12.40736 -12.09918 -12.05671 -11.91391 -11.61578 -10.95158 -9.38727 -9.27641 -9.06248 -7.72859 -5.40431 0.30586 0.98100 1.39765 1.48171 1.51526 1.83125 1.94835 2.00525 2.31769 2.48761 3.17447 3.25476 3.39977 3.53230 3.58465 4.30527 4.44622 4.58728 4.77801 4.82553 4.86431 5.00985 5.13949 5.18812 5.46333 5.54558 5.59531 5.70528 5.98421 6.10096 6.14411 6.41167 6.77090 6.80360 7.14795 7.68959 8.01061 9.06124 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.013175 C = 0.009559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.305306 B = 2124.765487 C = 2928.361293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.063 4.063 3 C -0.139 4.139 4 C -0.082 4.082 5 C -0.108 4.108 6 C 0.286 3.714 7 N -0.498 5.498 8 C 0.299 3.701 9 N -0.567 5.567 10 C -0.280 4.280 11 H 0.079 0.921 12 C -0.016 4.016 13 N -0.882 5.882 14 Si 0.937 3.063 15 H -0.283 1.283 16 H -0.305 1.305 17 H -0.278 1.278 18 C 0.230 3.770 19 C 0.201 3.799 20 N -0.502 5.502 21 C -0.062 4.062 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.072 0.928 25 H 0.149 0.851 26 H 0.125 0.875 27 H 0.255 0.745 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.526 2.101 -5.602 12.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.065 4.065 3 C -0.157 4.157 4 C -0.103 4.103 5 C -0.114 4.114 6 C -0.026 4.026 7 N -0.175 5.175 8 C 0.202 3.798 9 N -0.283 5.283 10 C -0.407 4.407 11 H 0.097 0.903 12 C -0.215 4.215 13 N -0.524 5.524 14 Si 0.767 3.233 15 H -0.209 1.209 16 H -0.233 1.233 17 H -0.205 1.205 18 C 0.101 3.899 19 C -0.119 4.119 20 N -0.182 5.182 21 C -0.083 4.083 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.143 0.857 27 H 0.066 0.934 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.289 2.545 -5.825 10.445 hybrid contribution 0.431 -0.318 1.648 1.733 sum -7.857 2.227 -4.177 9.173 Atomic orbital electron populations 1.20772 0.89341 1.03556 1.02402 1.20159 0.97230 0.92346 0.96727 1.20912 0.92439 0.98496 1.03818 1.20935 0.95117 0.94980 0.99240 1.17069 0.82972 0.96899 1.14487 1.26306 0.93499 0.91303 0.91520 1.81078 1.13759 1.10054 1.12657 1.17118 0.90572 0.83386 0.88721 1.41435 1.63665 1.21043 1.02170 1.19307 1.24802 1.13343 0.83278 0.90289 1.25141 0.97255 0.99741 0.99346 1.69973 1.20828 1.35754 1.25856 0.85686 0.78570 0.76726 0.82301 1.20875 1.23298 1.20465 1.19153 0.82047 1.00663 0.88052 1.32078 0.97018 0.91719 0.91050 1.81053 1.14901 1.10794 1.11465 1.20997 0.92163 0.97697 0.97397 0.91536 0.89840 0.90920 0.83371 0.85662 0.93404 0.84995 0.84639 0.86374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.16 10.00 71.24 0.71 -1.45 16 2 C -0.06 -1.81 5.88 -19.84 -0.12 -1.93 16 3 C -0.14 -3.89 9.67 22.26 0.22 -3.67 16 4 C -0.08 -2.73 9.75 22.53 0.22 -2.51 16 5 C -0.11 -4.41 5.76 -21.12 -0.12 -4.53 16 6 C 0.29 13.41 13.55 88.33 1.20 14.61 16 7 N -0.50 -25.34 18.41 19.00 0.35 -24.99 16 8 C 0.30 11.91 3.12 38.81 0.12 12.04 16 9 N -0.57 -23.37 1.91 -520.92 -0.99 -24.36 16 10 C -0.28 -13.33 9.70 84.06 0.82 -12.51 16 11 H 0.08 3.80 7.89 -2.91 -0.02 3.78 16 12 C -0.02 -0.77 5.26 84.88 0.45 -0.32 16 13 N -0.88 -42.73 9.69 21.65 0.21 -42.52 16 14 Si 0.94 42.80 29.59 68.60 2.03 44.83 16 15 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 16 H -0.31 -14.78 7.11 99.48 0.71 -14.07 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 C 0.23 7.32 6.14 84.57 0.52 7.84 16 19 C 0.20 7.92 14.44 89.44 1.29 9.21 16 20 N -0.50 -22.79 18.41 20.01 0.37 -22.42 16 21 C -0.06 -2.16 7.56 22.40 0.17 -1.99 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.08 1.31 8.08 -2.39 -0.02 1.29 16 24 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 25 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 26 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 27 H 0.26 12.39 8.31 -92.70 -0.77 11.62 16 28 H 0.13 3.48 8.08 -2.39 -0.02 3.46 16 29 H 0.14 3.24 8.00 -2.39 -0.02 3.22 16 30 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -64.38 280.92 8.59 -55.78 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: 1.16 Total: -1.10 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.47 Total: 14.78 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -0.06 Total: -114.29 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -64.38 8.59 -55.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051597216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.686 kcal (2) G-P(sol) polarization free energy of solvation -64.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds