Wall clock time and date at job start Mon Mar 30 2020 03:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 119.99752 * 2 1 4 4 H 1.48496 * 109.47126 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47107 * 120.00279 * 3 2 1 6 6 H 1.48498 * 109.47080 * 240.00102 * 3 2 1 7 7 C 1.37873 * 120.00565 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00254 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99465 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47292 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47447 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47077 * 177.38791 * 11 10 9 13 13 C 1.34419 * 124.34706 * 84.46388 * 12 11 10 14 14 O 1.21284 * 124.94548 * 359.57227 * 13 12 11 15 15 C 1.51292 * 110.11213 * 179.43548 * 13 12 11 16 16 C 1.54623 * 104.25470 * 344.14848 * 15 13 12 17 17 C 1.46758 * 124.35251 * 264.76326 * 12 11 10 18 18 H 1.09004 * 110.24800 * 78.01282 * 17 12 11 19 19 C 1.50705 * 110.24473 * 316.02089 * 17 12 11 20 20 O 1.20820 * 119.99479 * 332.29495 * 19 17 12 21 21 O 1.34228 * 119.99735 * 152.30322 * 19 17 12 22 22 H 0.97003 * 119.99870 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47207 * 299.99391 * 9 7 2 24 24 H 1.09000 * 109.47851 * 59.99917 * 9 7 2 25 25 H 1.09001 * 109.46596 * 299.99886 * 10 9 7 26 26 H 1.08999 * 109.47160 * 59.99358 * 10 9 7 27 27 H 1.08999 * 109.46762 * 297.39025 * 11 10 9 28 28 H 1.08999 * 109.46848 * 57.38830 * 11 10 9 29 29 H 1.08994 * 110.64064 * 225.35331 * 15 13 12 30 30 H 1.09006 * 110.37956 * 102.80921 * 15 13 12 31 31 H 1.09005 * 110.96708 * 266.46090 * 16 15 13 32 32 H 1.09003 * 111.00045 * 142.71622 * 16 15 13 33 33 H 0.96700 * 116.99620 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4990 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 7 2.4312 -6.0998 -0.0672 13 6 3.0487 -6.6320 1.0015 14 8 2.9040 -6.2568 2.1457 15 6 3.9478 -7.7696 0.5698 16 6 3.4727 -8.1080 -0.8622 17 6 2.8366 -6.7724 -1.3070 18 1 3.5671 -6.1668 -1.8433 19 6 1.6336 -7.0318 -2.1769 20 8 0.5442 -7.1743 -1.6744 21 8 1.7727 -7.1047 -3.5100 22 1 -0.4850 -0.8401 0.0004 23 1 0.6242 -2.5574 0.8881 24 1 0.6247 -2.5563 -0.8919 25 1 2.8720 -3.6034 -0.8927 26 1 2.8721 -3.6050 0.8872 27 1 0.8896 -5.0659 0.9093 28 1 0.8188 -5.0243 -0.8687 29 1 3.8215 -8.6299 1.2270 30 1 4.9892 -7.4476 0.5601 31 1 2.7319 -8.9075 -0.8486 32 1 4.3155 -8.3708 -1.5016 33 1 0.9724 -7.2723 -4.0263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061447898.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:45 Heat of formation + Delta-G solvation = -166.926260 kcal Electronic energy + Delta-G solvation = -17411.653347 eV Core-core repulsion = 14435.641866 eV Total energy + Delta-G solvation = -2976.011481 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.22895 -40.64987 -37.78621 -37.07205 -36.70512 -34.70718 -32.11736 -29.86896 -28.19239 -25.28461 -24.33878 -22.74994 -22.49248 -20.41970 -19.39531 -19.01924 -18.04256 -17.66180 -17.25437 -16.70402 -16.07385 -15.68928 -15.63915 -15.35464 -14.82729 -14.55540 -14.15309 -13.91438 -13.57837 -13.39598 -13.06913 -12.98632 -12.62642 -12.51201 -12.15672 -12.07221 -11.89642 -11.79270 -11.71365 -10.98847 -10.81679 -10.59547 -9.95943 -8.74631 -6.45804 0.93974 1.37685 1.50139 1.59591 1.65921 1.79244 2.08128 2.54480 3.10792 3.19600 3.33976 3.85522 3.91262 3.95590 4.08107 4.18693 4.29998 4.49179 4.51851 4.65670 4.78586 4.85911 4.93416 5.00481 5.20705 5.31323 5.36309 5.49086 5.91780 5.96783 6.11132 6.49905 6.84136 6.99466 7.37034 8.65807 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.027809 B = 0.005646 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.627142 B = 4958.377206 C = 5469.450469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.040 4.040 3 Si 1.121 2.879 4 H -0.281 1.281 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.621 4.621 8 H 0.052 0.948 9 C 0.011 3.989 10 C -0.097 4.097 11 C 0.137 3.863 12 N -0.607 5.607 13 C 0.501 3.499 14 O -0.580 6.580 15 C -0.137 4.137 16 C -0.100 4.100 17 C 0.130 3.870 18 H 0.142 0.858 19 C 0.478 3.522 20 O -0.542 6.542 21 O -0.499 6.499 22 H 0.254 0.746 23 H -0.017 1.017 24 H -0.005 1.005 25 H 0.066 0.934 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 -19.571 -8.412 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.941 3.059 4 H -0.207 1.207 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.659 4.659 8 H 0.070 0.930 9 C -0.027 4.027 10 C -0.136 4.136 11 C 0.014 3.986 12 N -0.341 5.341 13 C 0.291 3.709 14 O -0.459 6.459 15 C -0.177 4.177 16 C -0.137 4.137 17 C 0.025 3.975 18 H 0.159 0.841 19 C 0.320 3.680 20 O -0.432 6.432 21 O -0.312 6.312 22 H 0.063 0.937 23 H 0.001 0.999 24 H 0.014 0.986 25 H 0.084 0.916 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.109 0.891 32 H 0.171 0.829 33 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 10.081 -17.687 -7.483 21.690 hybrid contribution -1.284 -1.448 -0.063 1.937 sum 8.797 -19.135 -7.547 22.372 Atomic orbital electron populations 1.70921 1.07997 1.29761 1.48627 1.27584 0.96599 1.07098 0.92449 0.82905 0.74117 0.70694 0.78174 1.20664 1.19627 1.18780 1.22450 0.94727 0.93229 1.55474 0.92971 1.19103 0.94982 0.94431 0.94164 1.21616 0.98262 0.92908 1.00826 1.21282 0.90668 0.84704 1.01900 1.48323 1.44313 1.33385 1.08063 1.22037 0.80734 0.84492 0.83590 1.90721 1.66568 1.67075 1.21584 1.22450 1.00720 0.96506 0.97981 1.22754 1.02958 0.92073 0.95917 1.21660 0.92534 0.99038 0.84281 0.84070 1.23690 0.90343 0.71699 0.82281 1.90771 1.29933 1.46761 1.75701 1.84462 1.45365 1.83004 1.18369 0.93701 0.99916 0.98626 0.91577 0.94164 0.92841 0.90565 0.85751 0.84318 0.89083 0.82882 0.70676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.34 13.65 21.45 0.29 -60.05 16 2 C -0.04 -2.42 5.46 84.65 0.46 -1.96 16 3 Si 1.12 51.57 29.90 68.60 2.05 53.62 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.62 -37.28 9.11 25.60 0.23 -37.05 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 9 C 0.01 0.60 4.28 29.85 0.13 0.73 16 10 C -0.10 -4.38 5.48 30.60 0.17 -4.21 16 11 C 0.14 5.36 5.35 86.38 0.46 5.82 16 12 N -0.61 -18.37 2.59 -798.31 -2.07 -20.44 16 13 C 0.50 15.27 8.02 87.90 0.71 15.98 16 14 O -0.58 -24.19 17.68 -3.04 -0.05 -24.24 16 15 C -0.14 -2.01 6.86 30.59 0.21 -1.80 16 16 C -0.10 -0.99 6.68 31.65 0.21 -0.78 16 17 C 0.13 2.46 3.81 44.70 0.17 2.63 16 18 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 19 C 0.48 10.31 6.69 71.24 0.48 10.79 16 20 O -0.54 -16.46 16.09 21.98 0.35 -16.10 16 21 O -0.50 -7.16 13.42 -51.39 -0.69 -7.85 16 22 H 0.25 16.65 7.22 -92.71 -0.67 15.98 16 23 H -0.02 -1.05 8.01 -2.39 -0.02 -1.07 16 24 H 0.00 -0.26 8.01 -2.39 -0.02 -0.28 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.05 2.34 8.05 -2.39 -0.02 2.33 16 28 H 0.08 2.94 6.41 -2.39 -0.02 2.93 16 29 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.14 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.09 0.91 7.91 -2.38 -0.02 0.89 16 32 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.43 3.03 9.10 -74.06 -0.67 2.36 16 Total: -1.00 -86.23 287.69 3.66 -82.58 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 0.55 Total: 2.35 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 3.23 Total: -9.85 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.78 Total: -80.49 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.39 Total: -48.20 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -86.23 3.66 -82.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061447898.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.350 kcal (2) G-P(sol) polarization free energy of solvation -86.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds