Wall clock time and date at job start Mon Mar 30 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47188 * 299.99649 * 3 2 1 6 6 H 1.48501 * 109.47278 * 60.00094 * 3 2 1 7 7 C 1.37879 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47171 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47044 * 180.02562 * 11 10 9 13 13 C 1.34420 * 124.35242 * 90.02020 * 12 11 10 14 14 O 1.21283 * 124.93917 * 359.53285 * 13 12 11 15 15 C 1.51278 * 110.11582 * 179.80107 * 13 12 11 16 16 C 1.54784 * 104.12065 * 343.40725 * 15 13 12 17 17 C 1.46764 * 124.34707 * 269.99719 * 12 11 10 18 18 H 1.09003 * 110.24343 * 316.03631 * 17 12 11 19 19 C 1.50703 * 110.24639 * 78.03741 * 17 12 11 20 20 O 1.20825 * 120.00141 * 359.97438 * 19 17 12 21 21 O 1.34232 * 119.99893 * 180.02562 * 19 17 12 22 22 H 0.96998 * 119.99760 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47246 * 60.00545 * 9 7 2 24 24 H 1.09002 * 109.47763 * 300.00383 * 9 7 2 25 25 H 1.08993 * 109.47306 * 60.00222 * 10 9 7 26 26 H 1.09006 * 109.46971 * 299.99858 * 10 9 7 27 27 H 1.08993 * 109.47350 * 59.99605 * 11 10 9 28 28 H 1.08998 * 109.46759 * 299.99590 * 11 10 9 29 29 H 1.08996 * 110.49004 * 102.19373 * 15 13 12 30 30 H 1.09001 * 110.48644 * 224.84085 * 15 13 12 31 31 H 1.08997 * 111.17051 * 266.93264 * 16 15 13 32 32 H 1.09008 * 110.86851 * 143.13705 * 16 15 13 33 33 H 0.96692 * 116.99582 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 2.9241 -6.6775 1.1095 14 8 2.6505 -6.3466 2.2438 15 6 3.8736 -7.7951 0.7381 16 6 3.5542 -8.0835 -0.7487 17 6 2.9713 -6.7299 -1.2119 18 1 2.1755 -6.8911 -1.9392 19 6 4.0570 -5.8708 -1.8071 20 8 4.3604 -4.8279 -1.2778 21 8 4.6862 -6.2637 -2.9258 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8720 -3.6043 -0.8906 27 1 0.8539 -5.0446 -0.8913 28 1 0.8534 -5.0450 0.8886 29 1 4.9079 -7.4708 0.8525 30 1 3.6802 -8.6782 1.3470 31 1 2.8162 -8.8797 -0.8455 32 1 4.4621 -8.3266 -1.3009 33 1 5.3753 -5.6792 -3.2702 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061447901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:47 Heat of formation + Delta-G solvation = -130.126709 kcal Electronic energy + Delta-G solvation = -17609.944435 eV Core-core repulsion = 14635.528702 eV Total energy + Delta-G solvation = -2974.415732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13618 -39.37780 -36.50845 -35.94265 -34.58390 -32.66492 -30.53484 -28.70595 -26.62364 -23.81990 -23.09783 -21.56563 -20.34529 -19.07637 -18.12056 -17.30667 -16.83767 -16.01259 -15.61112 -15.32060 -15.07454 -14.40599 -13.91751 -13.59001 -13.47845 -13.18573 -12.82216 -12.35064 -11.97382 -11.90021 -11.57808 -11.55160 -11.28549 -10.89973 -10.77447 -10.51971 -10.31165 -9.83171 -9.46552 -9.37391 -9.05101 -8.51157 -8.27579 -5.93280 -3.94101 2.14003 2.44402 2.87116 3.23779 3.35716 3.42638 3.48817 4.07997 4.18382 4.52882 4.55706 4.82110 5.05060 5.20207 5.39473 5.42514 5.47481 5.61137 5.66066 5.97064 6.22588 6.39017 6.40611 6.79191 7.07682 7.22513 7.28528 7.75621 7.85769 7.93633 8.08525 8.25506 8.53206 9.12982 9.69267 11.18387 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.006016 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.398440 B = 4653.332937 C = 5137.883809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.126 4.126 11 C 0.122 3.878 12 N -0.596 5.596 13 C 0.518 3.482 14 O -0.520 6.520 15 C -0.161 4.161 16 C -0.117 4.117 17 C 0.143 3.857 18 H 0.126 0.874 19 C 0.451 3.549 20 O -0.473 6.473 21 O -0.520 6.520 22 H 0.259 0.741 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.501 -19.034 -6.275 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.165 4.165 11 C 0.002 3.998 12 N -0.330 5.330 13 C 0.305 3.695 14 O -0.395 6.395 15 C -0.201 4.201 16 C -0.155 4.155 17 C 0.036 3.964 18 H 0.144 0.856 19 C 0.289 3.711 20 O -0.357 6.357 21 O -0.333 6.333 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 6.918 -18.621 -5.334 20.568 hybrid contribution 0.906 1.560 -0.385 1.844 sum 7.824 -17.061 -5.719 19.621 Atomic orbital electron populations 1.69977 1.06008 1.26351 1.51465 1.25024 0.94853 0.99206 0.95508 0.86542 0.80193 0.83830 0.77503 1.19776 1.21062 1.21005 1.21282 0.93134 0.90949 1.49721 0.92671 1.19069 0.93930 0.91514 0.96974 1.22148 0.99347 0.92685 1.02282 1.21855 0.90143 0.85151 1.02680 1.48333 1.44574 1.35250 1.04851 1.20773 0.80714 0.83423 0.84566 1.90752 1.61145 1.66813 1.20783 1.22469 1.01000 0.99478 0.97142 1.22642 1.03022 0.94399 0.95443 1.21063 0.94243 0.91464 0.89661 0.85628 1.23966 0.82770 0.85828 0.78530 1.90847 1.61682 1.23153 1.60018 1.84465 1.52087 1.54888 1.41829 0.93162 0.96785 0.96626 0.93155 0.91254 0.90816 0.89875 0.87817 0.87499 0.88208 0.88243 0.73028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.29 55.43 0.74 -27.24 16 2 C 0.05 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.73 29.54 -169.99 -5.02 17.71 16 4 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.51 -15.50 9.11 -34.44 -0.31 -15.81 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.49 16 10 C -0.13 -2.91 4.68 -26.73 -0.13 -3.03 16 11 C 0.12 2.21 5.92 -4.04 -0.02 2.19 16 12 N -0.60 -9.04 2.26 -166.19 -0.38 -9.41 16 13 C 0.52 8.19 8.02 -10.86 -0.09 8.10 16 14 O -0.52 -10.64 17.59 5.55 0.10 -10.54 16 15 C -0.16 -1.57 6.86 -26.66 -0.18 -1.75 16 16 C -0.12 -0.82 6.70 -25.01 -0.17 -0.99 16 17 C 0.14 1.52 3.61 -68.16 -0.25 1.27 16 18 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 19 C 0.45 5.59 7.59 36.01 0.27 5.87 16 20 O -0.47 -8.27 13.76 -18.75 -0.26 -8.53 16 21 O -0.52 -4.53 13.27 -39.26 -0.52 -5.05 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.07 1.62 5.44 -51.93 -0.28 1.34 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.59 7.93 -51.93 -0.41 1.18 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.53 7.76 -51.92 -0.40 0.13 16 33 H 0.41 2.25 9.10 45.56 0.41 2.66 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -38.02 285.36 -5.75 -43.78 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.61 Total: -2.88 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -1.11 Total: -2.13 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.36 Total: -36.65 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.68 Total: -24.12 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -38.02 -5.75 -43.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061447901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.350 kcal (2) G-P(sol) polarization free energy of solvation -38.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds