Wall clock time and date at job start Mon Mar 30 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99852 * 2 1 4 4 H 1.48506 * 109.47170 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47188 * 299.99649 * 3 2 1 6 6 H 1.48501 * 109.47278 * 60.00094 * 3 2 1 7 7 C 1.37879 * 120.00049 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99866 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47091 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47171 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.47044 * 180.02562 * 11 10 9 13 13 C 1.34420 * 124.35242 * 90.02020 * 12 11 10 14 14 O 1.21283 * 124.93917 * 359.53285 * 13 12 11 15 15 C 1.51278 * 110.11582 * 179.80107 * 13 12 11 16 16 C 1.54784 * 104.12065 * 343.40725 * 15 13 12 17 17 C 1.46764 * 124.34707 * 269.99719 * 12 11 10 18 18 H 1.09003 * 110.24343 * 316.03631 * 17 12 11 19 19 C 1.50703 * 110.24639 * 78.03741 * 17 12 11 20 20 O 1.20825 * 120.00141 * 359.97438 * 19 17 12 21 21 O 1.34232 * 119.99893 * 180.02562 * 19 17 12 22 22 H 0.96998 * 119.99760 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47246 * 60.00545 * 9 7 2 24 24 H 1.09002 * 109.47763 * 300.00383 * 9 7 2 25 25 H 1.08993 * 109.47306 * 60.00222 * 10 9 7 26 26 H 1.09006 * 109.46971 * 299.99858 * 10 9 7 27 27 H 1.08993 * 109.47350 * 59.99605 * 11 10 9 28 28 H 1.08998 * 109.46759 * 299.99590 * 11 10 9 29 29 H 1.08996 * 110.49004 * 102.19373 * 15 13 12 30 30 H 1.09001 * 110.48644 * 224.84085 * 15 13 12 31 31 H 1.08997 * 111.17051 * 266.93264 * 16 15 13 32 32 H 1.09008 * 110.86851 * 143.13705 * 16 15 13 33 33 H 0.96692 * 116.99582 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 2.9241 -6.6775 1.1095 14 8 2.6505 -6.3466 2.2438 15 6 3.8736 -7.7951 0.7381 16 6 3.5542 -8.0835 -0.7487 17 6 2.9713 -6.7299 -1.2119 18 1 2.1755 -6.8911 -1.9392 19 6 4.0570 -5.8708 -1.8071 20 8 4.3604 -4.8279 -1.2778 21 8 4.6862 -6.2637 -2.9258 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5567 -0.8904 24 1 0.6247 -2.5571 0.8896 25 1 2.8719 -3.6044 0.8894 26 1 2.8720 -3.6043 -0.8906 27 1 0.8539 -5.0446 -0.8913 28 1 0.8534 -5.0450 0.8886 29 1 4.9079 -7.4708 0.8525 30 1 3.6802 -8.6782 1.3470 31 1 2.8162 -8.8797 -0.8455 32 1 4.4621 -8.3266 -1.3009 33 1 5.3753 -5.6792 -3.2702 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061447901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:47 Heat of formation + Delta-G solvation = -158.676381 kcal Electronic energy + Delta-G solvation = -17611.182441 eV Core-core repulsion = 14635.528702 eV Total energy + Delta-G solvation = -2975.653739 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.16543 -40.44848 -37.67624 -36.95723 -36.35666 -34.53615 -32.17792 -29.65231 -28.47794 -25.36968 -24.30725 -22.50257 -22.26816 -20.28423 -19.05334 -18.63395 -18.22973 -17.67277 -16.78887 -16.53232 -16.38327 -16.14055 -15.45759 -14.83842 -14.61762 -14.38774 -14.20227 -13.79262 -13.54875 -13.26321 -12.94788 -12.74418 -12.56182 -12.52207 -12.42478 -12.25638 -11.70506 -11.56880 -11.39613 -11.16111 -10.89280 -10.59750 -9.91027 -8.25536 -6.36618 1.20485 1.33183 1.34920 1.35692 1.48764 1.79229 2.26567 2.37369 3.06365 3.22241 3.43505 3.90180 4.06748 4.12589 4.26853 4.33475 4.48615 4.59399 4.74743 4.82681 4.91453 5.00223 5.08635 5.13332 5.37494 5.52423 5.62933 5.70892 5.85438 6.05641 6.21860 6.77729 6.99360 7.08683 7.31986 8.86456 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.030120 B = 0.006016 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.398440 B = 4653.332937 C = 5137.883809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.046 0.954 9 C 0.028 3.972 10 C -0.106 4.106 11 C 0.131 3.869 12 N -0.601 5.601 13 C 0.500 3.500 14 O -0.582 6.582 15 C -0.150 4.150 16 C -0.096 4.096 17 C 0.132 3.868 18 H 0.161 0.839 19 C 0.459 3.541 20 O -0.536 6.536 21 O -0.501 6.501 22 H 0.266 0.734 23 H 0.005 0.995 24 H -0.012 1.012 25 H 0.015 0.985 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.521 -20.688 -8.145 23.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.064 0.936 9 C -0.010 4.010 10 C -0.144 4.144 11 C 0.009 3.991 12 N -0.333 5.333 13 C 0.290 3.710 14 O -0.462 6.462 15 C -0.190 4.190 16 C -0.133 4.133 17 C 0.027 3.973 18 H 0.178 0.822 19 C 0.300 3.700 20 O -0.425 6.425 21 O -0.314 6.314 22 H 0.075 0.925 23 H 0.023 0.977 24 H 0.006 0.994 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 7.964 -20.328 -7.274 23.012 hybrid contribution 0.604 2.050 0.133 2.141 sum 8.568 -18.278 -7.141 21.413 Atomic orbital electron populations 1.70083 1.07566 1.27862 1.51459 1.25963 0.95894 1.03232 0.94504 0.85392 0.78663 0.78661 0.78290 1.19435 1.19378 1.19990 1.21617 0.93007 0.92751 1.50940 0.93573 1.18951 0.94180 0.92816 0.95005 1.21842 0.98042 0.94028 1.00491 1.21459 0.90305 0.84201 1.03158 1.48355 1.43944 1.34038 1.06972 1.21990 0.80775 0.84498 0.83731 1.90705 1.63292 1.68940 1.23277 1.22519 0.99117 0.97646 0.99731 1.22792 1.05013 0.92731 0.92790 1.21626 0.94844 0.92314 0.88546 0.82208 1.24325 0.82388 0.84855 0.78452 1.90839 1.63851 1.25915 1.61930 1.84424 1.52153 1.54728 1.40061 0.92521 0.97697 0.99412 0.96603 0.91252 0.88065 0.91706 0.87402 0.84961 0.84649 0.85499 0.71181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.84 13.29 21.45 0.28 -58.55 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 47.10 29.54 68.60 2.03 49.13 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.55 -34.16 9.11 25.60 0.23 -33.93 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.62 4.97 29.85 0.15 1.77 16 10 C -0.11 -5.11 4.68 30.60 0.14 -4.97 16 11 C 0.13 4.88 5.92 86.38 0.51 5.39 16 12 N -0.60 -17.84 2.26 -798.31 -1.80 -19.64 16 13 C 0.50 15.75 8.02 87.90 0.70 16.46 16 14 O -0.58 -24.98 17.59 -3.04 -0.05 -25.03 16 15 C -0.15 -2.52 6.86 30.64 0.21 -2.31 16 16 C -0.10 -0.87 6.70 31.71 0.21 -0.66 16 17 C 0.13 2.39 3.61 44.70 0.16 2.55 16 18 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 19 C 0.46 10.39 7.59 71.24 0.54 10.93 16 20 O -0.54 -18.79 13.76 21.97 0.30 -18.49 16 21 O -0.50 -7.00 13.27 -51.43 -0.68 -7.68 16 22 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 23 H 0.00 0.27 8.14 -2.38 -0.02 0.26 16 24 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 25 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.07 3.37 5.44 -2.38 -0.01 3.36 16 27 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.06 2.63 7.93 -2.39 -0.02 2.62 16 29 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.13 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.13 0.58 7.76 -2.38 -0.02 0.57 16 33 H 0.43 3.47 9.10 -74.06 -0.67 2.80 16 Total: -1.00 -88.38 285.36 3.85 -84.53 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: 0.45 Total: -0.07 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 3.33 Total: -4.18 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -1.52 Total: -78.20 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -0.43 Total: -51.20 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -88.38 3.85 -84.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061447901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.151 kcal (2) G-P(sol) polarization free energy of solvation -88.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds