Wall clock time and date at job start Mon Mar 30 2020 03:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47265 * 2 1 4 4 C 1.46500 * 120.00161 * 270.00482 * 3 2 1 5 5 C 1.50696 * 109.46814 * 269.99725 * 4 3 2 6 6 H 1.07997 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99953 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00150 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99863 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46909 * 90.00175 * 9 7 5 11 11 H 1.48495 * 109.47394 * 210.00137 * 9 7 5 12 12 H 1.48495 * 109.47373 * 330.00533 * 9 7 5 13 13 C 1.38601 * 119.99977 * 89.99683 * 3 2 1 14 14 N 1.29693 * 124.94809 * 0.02562 * 13 3 2 15 15 C 1.32124 * 116.86371 * 179.97438 * 14 13 3 16 16 C 1.50703 * 122.70869 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.47109 * 275.00382 * 16 15 14 18 18 C 1.33321 * 114.58029 * 0.27266 * 15 14 13 19 19 S 1.70968 * 124.95102 * 180.02562 * 13 3 2 20 20 H 1.08996 * 109.46857 * 299.99616 * 1 2 3 21 21 H 1.08997 * 109.47432 * 60.00155 * 1 2 3 22 22 H 1.09012 * 109.46829 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47275 * 240.00397 * 2 1 3 24 24 H 1.08993 * 109.47343 * 120.00345 * 2 1 3 25 25 H 1.09001 * 109.47132 * 29.99713 * 4 3 2 26 26 H 1.08996 * 109.46935 * 149.99405 * 4 3 2 27 27 H 0.97005 * 120.00110 * 179.97438 * 8 7 5 28 28 H 1.08992 * 109.46894 * 155.00118 * 16 15 14 29 29 H 1.09004 * 109.47113 * 35.00268 * 16 15 14 30 30 H 1.00902 * 111.00068 * 56.04268 * 17 16 15 31 31 H 1.00897 * 110.99706 * 179.97438 * 17 16 15 32 32 H 1.08000 * 125.94973 * 179.69664 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 5.3912 2.1836 -3.2574 9 14 3.0129 3.4362 -3.9286 10 1 3.1156 4.8563 -3.5067 11 1 3.4065 3.3140 -5.3553 12 1 1.6134 2.9696 -3.7595 13 6 2.2493 2.0346 1.2003 14 7 2.0666 1.5167 2.3752 15 6 2.3387 2.2849 3.4152 16 6 2.1744 1.8171 4.8383 17 7 0.7820 2.0171 5.2619 18 6 2.7653 3.5091 3.1039 19 16 2.8165 3.6407 1.3479 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.5816 1.6878 -2.0284 26 1 2.0954 3.1411 -1.1383 27 1 5.7172 2.5741 -4.0833 28 1 2.8374 2.3890 5.4875 29 1 2.4257 0.7585 4.9041 30 1 0.1431 1.5492 4.6366 31 1 0.6460 1.7105 6.2135 32 1 3.0338 4.2846 3.8060 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070628836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:41 Heat of formation + Delta-G solvation = 48.308524 kcal Electronic energy + Delta-G solvation = -15204.259158 eV Core-core repulsion = 12712.626580 eV Total energy + Delta-G solvation = -2491.632578 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.25239 -36.73595 -34.03628 -32.77609 -30.74974 -29.42857 -27.16508 -25.36536 -23.55451 -22.87013 -20.37908 -18.83608 -17.29645 -17.05264 -15.96383 -15.67226 -14.84060 -14.74386 -14.35204 -13.70111 -13.44635 -13.17185 -12.69621 -12.54784 -12.43416 -12.01077 -11.89956 -11.59764 -11.05349 -10.83075 -10.54988 -10.49801 -10.36940 -9.72437 -9.18208 -8.93537 -8.75691 -8.70653 -8.42665 -6.78262 -6.23403 -4.25716 1.69563 1.92668 2.55911 3.17016 3.23545 3.25356 3.47813 3.66729 4.24693 4.77907 4.98728 5.08279 5.37348 5.49035 5.62116 5.70038 5.79390 5.87278 6.14363 6.20250 6.26414 6.47252 6.49276 6.60427 6.74796 7.09161 7.36318 7.43083 7.50526 7.89803 8.30897 8.61348 8.82780 9.34547 10.89215 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.030331 B = 0.007453 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.915089 B = 3755.790312 C = 4224.558391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 N -0.554 5.554 4 C 0.221 3.779 5 C -0.542 4.542 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.888 5.888 9 Si 0.868 3.132 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.264 1.264 13 C 0.343 3.657 14 N -0.575 5.575 15 C 0.110 3.890 16 C 0.142 3.858 17 N -0.844 5.844 18 C -0.317 4.317 19 S 0.105 5.895 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.026 0.974 27 H 0.267 0.733 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.345 0.655 31 H 0.339 0.661 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 -0.476 10.400 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 N -0.269 5.269 4 C 0.100 3.900 5 C -0.581 4.581 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.525 5.525 9 Si 0.694 3.306 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.189 1.189 13 C -0.027 4.027 14 N -0.304 5.304 15 C -0.022 4.022 16 C 0.009 3.991 17 N -0.374 5.374 18 C -0.460 4.460 19 S 0.356 5.644 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.098 0.902 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.158 0.842 31 H 0.151 0.849 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.058 0.512 9.213 12.251 hybrid contribution -0.467 -0.747 0.218 0.907 sum -8.525 -0.235 9.431 12.715 Atomic orbital electron populations 1.22154 0.96959 1.01261 1.01886 1.21301 0.93160 0.82132 1.02882 1.46380 1.66229 1.12980 1.01324 1.19860 0.98236 0.91952 0.79903 1.21351 0.94957 1.33929 1.07853 0.90234 1.24837 0.94934 0.95656 0.97055 1.69881 1.15051 1.44175 1.23426 0.86969 0.81599 0.81615 0.80389 1.19583 1.20669 1.18901 1.23468 0.95653 0.93794 0.89796 1.66229 1.31481 1.36422 0.96232 1.19453 0.98730 0.89931 0.94133 1.20138 0.90482 0.98699 0.89795 1.58710 1.04902 1.66928 1.06891 1.26095 1.19862 1.02577 0.97511 1.84229 1.66163 1.12298 1.01711 0.92671 0.92870 0.92249 0.90227 0.90689 0.94009 0.95610 0.92272 0.89981 0.94247 0.84223 0.84901 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.24 37.16 0.38 -2.07 16 2 C 0.13 2.33 6.25 -4.04 -0.03 2.31 16 3 N -0.55 -11.61 2.56 -177.40 -0.45 -12.07 16 4 C 0.22 5.07 4.20 -5.20 -0.02 5.05 16 5 C -0.54 -14.64 9.94 -34.44 -0.34 -14.99 16 6 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 7 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 8 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 9 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 13 C 0.34 7.13 7.74 -87.68 -0.68 6.45 16 14 N -0.58 -11.20 9.80 -11.36 -0.11 -11.32 16 15 C 0.11 1.91 6.25 -84.18 -0.53 1.39 16 16 C 0.14 1.90 7.22 -4.97 -0.04 1.87 16 17 N -0.84 -10.04 9.61 -11.40 -0.11 -10.15 16 18 C -0.32 -5.46 11.08 29.02 0.32 -5.14 16 19 S 0.11 2.06 21.68 -107.50 -2.33 -0.27 16 20 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 23 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 24 H 0.07 1.34 7.61 -51.93 -0.40 0.95 16 25 H 0.04 0.93 7.13 -51.93 -0.37 0.56 16 26 H 0.03 0.60 6.47 -51.93 -0.34 0.26 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.35 4.28 8.99 -39.29 -0.35 3.93 16 31 H 0.34 3.02 9.08 -39.29 -0.36 2.66 16 32 H 0.16 2.36 8.06 -52.49 -0.42 1.93 16 LS Contribution 286.67 15.07 4.32 4.32 Total: -1.00 -29.70 286.67 -7.96 -37.67 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.35 Total: 4.77 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.03 Total: -3.04 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.10 Total: -58.89 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.33 Total: -0.27 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.70 -7.96 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.975 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds