Wall clock time and date at job start Mon Mar 30 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47265 * 2 1 4 4 C 1.46500 * 120.00161 * 270.00482 * 3 2 1 5 5 C 1.50696 * 109.46814 * 269.99725 * 4 3 2 6 6 H 1.07997 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99953 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00150 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99863 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46909 * 90.00175 * 9 7 5 11 11 H 1.48495 * 109.47394 * 210.00137 * 9 7 5 12 12 H 1.48495 * 109.47373 * 330.00533 * 9 7 5 13 13 C 1.38601 * 119.99977 * 89.99683 * 3 2 1 14 14 N 1.29693 * 124.94809 * 0.02562 * 13 3 2 15 15 C 1.32124 * 116.86371 * 179.97438 * 14 13 3 16 16 C 1.50703 * 122.70869 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.47109 * 275.00382 * 16 15 14 18 18 C 1.33321 * 114.58029 * 0.27266 * 15 14 13 19 19 S 1.70968 * 124.95102 * 180.02562 * 13 3 2 20 20 H 1.08996 * 109.46857 * 299.99616 * 1 2 3 21 21 H 1.08997 * 109.47432 * 60.00155 * 1 2 3 22 22 H 1.09012 * 109.46829 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47275 * 240.00397 * 2 1 3 24 24 H 1.08993 * 109.47343 * 120.00345 * 2 1 3 25 25 H 1.09001 * 109.47132 * 29.99713 * 4 3 2 26 26 H 1.08996 * 109.46935 * 149.99405 * 4 3 2 27 27 H 0.97005 * 120.00110 * 179.97438 * 8 7 5 28 28 H 1.08992 * 109.46894 * 155.00118 * 16 15 14 29 29 H 1.09004 * 109.47113 * 35.00268 * 16 15 14 30 30 H 1.00902 * 111.00068 * 56.04268 * 17 16 15 31 31 H 1.00897 * 110.99706 * 179.97438 * 17 16 15 32 32 H 1.08000 * 125.94973 * 179.69664 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 5.3912 2.1836 -3.2574 9 14 3.0129 3.4362 -3.9286 10 1 3.1156 4.8563 -3.5067 11 1 3.4065 3.3140 -5.3553 12 1 1.6134 2.9696 -3.7595 13 6 2.2493 2.0346 1.2003 14 7 2.0666 1.5167 2.3752 15 6 2.3387 2.2849 3.4152 16 6 2.1744 1.8171 4.8383 17 7 0.7820 2.0171 5.2619 18 6 2.7653 3.5091 3.1039 19 16 2.8165 3.6407 1.3479 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.5816 1.6878 -2.0284 26 1 2.0954 3.1411 -1.1383 27 1 5.7172 2.5741 -4.0833 28 1 2.8374 2.3890 5.4875 29 1 2.4257 0.7585 4.9041 30 1 0.1431 1.5492 4.6366 31 1 0.6460 1.7105 6.2135 32 1 3.0338 4.2846 3.8060 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070628836.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:40 Heat of formation + Delta-G solvation = 27.546603 kcal Electronic energy + Delta-G solvation = -15205.159462 eV Core-core repulsion = 12712.626580 eV Total energy + Delta-G solvation = -2492.532882 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69944 -38.26159 -35.22193 -34.71578 -32.22820 -30.96294 -28.86132 -26.60136 -24.88885 -24.68606 -21.88765 -20.26957 -19.12905 -18.79806 -17.31891 -16.86920 -16.59190 -16.14772 -15.79584 -15.12191 -14.76371 -14.67259 -14.35746 -14.04278 -13.87927 -13.60087 -13.21056 -13.01176 -12.63037 -12.54087 -12.13250 -12.01128 -11.87874 -11.75452 -10.85014 -10.75800 -10.43424 -10.03655 -9.60093 -8.36662 -8.30533 -6.42935 0.21766 0.42824 1.11103 1.36051 1.37024 1.46162 2.04679 2.12050 2.29706 2.98422 3.56992 3.93127 4.11407 4.26951 4.37865 4.46406 4.54810 4.63127 4.70018 4.72871 4.89203 4.96893 5.01339 5.28885 5.35213 5.39550 5.81588 6.13154 6.27397 6.35279 6.60721 6.61621 7.10367 7.23648 8.81730 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.030331 B = 0.007453 C = 0.006626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.915089 B = 3755.790312 C = 4224.558391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.127 3.873 3 N -0.566 5.566 4 C 0.232 3.768 5 C -0.542 4.542 6 H 0.028 0.972 7 C 0.022 3.978 8 N -0.939 5.939 9 Si 0.937 3.063 10 H -0.264 1.264 11 H -0.278 1.278 12 H -0.238 1.238 13 C 0.322 3.678 14 N -0.576 5.576 15 C 0.096 3.904 16 C 0.147 3.853 17 N -0.845 5.845 18 C -0.304 4.304 19 S 0.071 5.929 20 H 0.047 0.953 21 H 0.053 0.947 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.031 0.969 27 H 0.270 0.730 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.342 0.658 31 H 0.357 0.643 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.404 0.111 11.307 15.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.003 3.997 3 N -0.283 5.283 4 C 0.110 3.890 5 C -0.581 4.581 6 H 0.047 0.953 7 C -0.177 4.177 8 N -0.578 5.578 9 Si 0.759 3.241 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.161 1.161 13 C -0.048 4.048 14 N -0.305 5.305 15 C -0.036 4.036 16 C 0.014 3.986 17 N -0.377 5.377 18 C -0.446 4.446 19 S 0.321 5.679 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.106 0.894 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.154 0.846 31 H 0.172 0.828 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.069 1.078 10.185 14.362 hybrid contribution 0.235 -0.981 0.093 1.013 sum -9.833 0.097 10.277 14.224 Atomic orbital electron populations 1.22028 0.94299 1.02999 1.01492 1.21437 0.95239 0.80701 1.02315 1.46358 1.67135 1.13911 1.00852 1.19591 0.95601 0.92533 0.81246 1.21467 0.96512 1.32844 1.07286 0.95320 1.25761 0.96479 0.96994 0.98490 1.70039 1.17456 1.45997 1.24349 0.85877 0.80482 0.79692 0.78094 1.18834 1.20372 1.16148 1.23688 0.96709 0.94250 0.90199 1.66277 1.31043 1.36840 0.96328 1.20115 0.98230 0.89871 0.95365 1.20187 0.91790 0.99024 0.87619 1.58674 1.03909 1.67043 1.08024 1.26407 1.18904 1.03302 0.95989 1.84262 1.66524 1.12553 1.04581 0.93398 0.92770 0.89417 0.90827 0.91214 0.92612 0.95150 0.92092 0.87860 0.94116 0.84561 0.82812 0.79230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 10.24 71.98 0.74 -3.46 16 2 C 0.13 4.51 6.25 86.38 0.54 5.05 16 3 N -0.57 -23.73 2.56 -715.18 -1.83 -25.56 16 4 C 0.23 10.56 4.20 85.63 0.36 10.92 16 5 C -0.54 -30.03 9.94 25.60 0.25 -29.78 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.02 1.23 5.47 84.66 0.46 1.69 16 8 N -0.94 -56.84 13.96 21.45 0.30 -56.54 16 9 Si 0.94 40.99 27.47 68.60 1.88 42.87 16 10 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 13 C 0.32 13.32 7.74 179.32 1.39 14.70 16 14 N -0.58 -21.99 9.80 -189.86 -1.86 -23.85 16 15 C 0.10 3.16 6.25 41.40 0.26 3.42 16 16 C 0.15 3.55 7.22 85.56 0.62 4.17 16 17 N -0.84 -17.80 9.61 -189.99 -1.83 -19.63 16 18 C -0.30 -9.90 11.08 66.71 0.74 -9.16 16 19 S 0.07 2.75 21.68 -56.49 -1.22 1.52 16 20 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 23 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 24 H 0.07 2.49 7.61 -2.39 -0.02 2.48 16 25 H 0.06 2.38 7.13 -2.39 -0.02 2.37 16 26 H 0.03 1.37 6.47 -2.39 -0.02 1.35 16 27 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 28 H 0.10 2.07 8.10 -2.39 -0.02 2.05 16 29 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.34 7.73 8.99 -89.69 -0.81 6.92 16 31 H 0.36 5.31 9.08 -89.70 -0.81 4.49 16 32 H 0.19 4.98 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -65.17 286.67 0.26 -64.92 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.54 Total: 18.71 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 5.36 Total: -2.44 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.22 Total: -125.59 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.88 Total: 42.87 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.22 Total: 1.52 kcal Total: -65.17 0.26 -64.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628836.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.462 kcal (2) G-P(sol) polarization free energy of solvation -65.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds