Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46881 * 2 1 4 4 C 1.50698 * 109.46878 * 120.00028 * 2 1 3 5 5 H 1.07994 * 120.00176 * 120.00203 * 4 2 1 6 6 C 1.37880 * 119.99745 * 299.99550 * 4 2 1 7 7 N 1.31513 * 120.00088 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99713 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47379 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46852 * 120.00501 * 8 6 4 11 11 H 1.48500 * 109.47116 * 240.00009 * 8 6 4 12 12 N 1.46503 * 109.47133 * 239.99815 * 2 1 3 13 13 C 1.46501 * 120.00051 * 300.00294 * 12 2 1 14 14 C 1.38604 * 119.99792 * 120.00059 * 12 2 1 15 15 N 1.29696 * 124.94749 * 180.27740 * 14 12 2 16 16 C 1.32119 * 116.86510 * 180.22436 * 15 14 12 17 17 C 1.50697 * 122.71059 * 179.75474 * 16 15 14 18 18 N 1.46905 * 109.47066 * 274.73776 * 17 16 15 19 19 C 1.33335 * 114.58060 * 359.48881 * 16 15 14 20 20 S 1.70964 * 124.95410 * 359.97438 * 14 12 2 21 21 H 1.08993 * 109.47298 * 300.00598 * 1 2 3 22 22 H 1.09011 * 109.47014 * 60.00120 * 1 2 3 23 23 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00025 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46834 * 269.99839 * 13 12 2 26 26 H 1.09000 * 109.47151 * 29.99558 * 13 12 2 27 27 H 1.08998 * 109.47133 * 150.00325 * 13 12 2 28 28 H 1.09001 * 109.47558 * 154.73939 * 17 16 15 29 29 H 1.08998 * 109.47216 * 34.73601 * 17 16 15 30 30 H 1.00901 * 110.99869 * 56.04737 * 18 17 16 31 31 H 1.00896 * 110.99543 * 179.97438 * 18 17 16 32 32 H 1.07994 * 125.95317 * 180.28631 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1471 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8165 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.8153 -0.0171 -2.1085 15 7 3.2945 -0.5315 -3.1984 16 6 4.0412 0.2559 -3.9521 17 6 4.6681 -0.2070 -5.2420 18 7 5.9497 -0.8652 -4.9550 19 6 4.1907 1.4947 -3.4822 20 16 3.3036 1.6151 -1.9650 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7082 1.1610 3.4843 25 1 2.4157 -2.7377 -0.9717 26 1 0.6904 -2.3002 -0.9846 27 1 1.6239 -2.2853 -2.5002 28 1 4.8381 0.6514 -5.8919 29 1 4.0007 -0.9117 -5.7379 30 1 5.8277 -1.6254 -4.3028 31 1 6.3900 -1.1852 -5.8046 32 1 4.7567 2.2864 -3.9503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070628850.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = 49.409095 kcal Electronic energy + Delta-G solvation = -15242.216137 eV Core-core repulsion = 12750.631283 eV Total energy + Delta-G solvation = -2491.584853 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.19659 -36.75504 -34.15276 -32.84131 -29.89511 -28.57073 -26.46103 -25.38123 -25.21755 -22.41204 -20.12318 -18.87914 -17.29600 -16.45967 -15.93688 -15.52207 -14.92186 -14.74809 -13.99591 -13.88631 -13.39281 -12.83114 -12.60950 -12.44583 -12.00069 -11.66984 -11.38011 -11.18527 -11.00070 -10.75802 -10.70664 -10.35334 -10.23523 -9.56893 -9.02148 -8.90125 -8.69317 -8.59344 -8.43411 -6.72121 -6.20081 -4.31553 1.71795 1.93553 2.55984 3.19501 3.27992 3.31825 3.49965 3.79119 4.30064 4.82967 5.04870 5.09567 5.38403 5.62338 5.85844 5.95438 6.18577 6.24573 6.39464 6.53384 6.66653 6.72937 6.82992 7.10864 7.15902 7.45971 7.47755 7.62370 7.84577 7.96226 8.20734 8.60403 8.78240 9.36443 10.82459 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034006 B = 0.006540 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.184435 B = 4280.231381 C = 4354.019415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.269 3.731 3 H 0.049 0.951 4 C -0.529 4.529 5 H 0.064 0.936 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.555 5.555 13 C 0.112 3.888 14 C 0.341 3.659 15 N -0.581 5.581 16 C 0.113 3.887 17 C 0.142 3.858 18 N -0.844 5.844 19 C -0.320 4.320 20 S 0.089 5.911 21 H 0.098 0.902 22 H 0.015 0.985 23 H 0.036 0.964 24 H 0.265 0.735 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.347 0.653 31 H 0.338 0.662 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 -1.188 -10.280 10.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.168 3.832 3 H 0.066 0.934 4 C -0.568 4.568 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.270 5.270 13 C -0.033 4.033 14 C -0.030 4.030 15 N -0.310 5.310 16 C -0.019 4.019 17 C 0.009 3.991 18 N -0.375 5.375 19 C -0.463 4.463 20 S 0.339 5.661 21 H 0.117 0.883 22 H 0.034 0.966 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.868 -0.196 -9.045 9.491 hybrid contribution 0.242 -1.564 -0.233 1.600 sum 3.109 -1.761 -9.279 9.943 Atomic orbital electron populations 1.22145 0.97417 1.00150 1.01190 1.19111 0.91630 0.92578 0.79834 0.93351 1.21342 1.32206 1.13475 0.89781 0.91747 1.24896 0.94671 0.94926 0.99089 1.69864 1.36027 1.22531 1.24081 0.86372 0.78696 0.79678 0.82339 1.19679 1.20734 1.20768 1.46896 1.48237 1.11145 1.20675 1.21399 1.00241 0.81359 1.00348 1.23631 0.94484 0.93595 0.91321 1.66254 1.21135 1.36694 1.06893 1.19473 0.96134 0.89504 0.96834 1.20136 0.89051 0.98318 0.91595 1.58697 1.24167 1.36756 1.17839 1.26063 1.15272 1.02445 1.02563 1.84154 1.49212 1.10576 1.22140 0.88337 0.96598 0.94464 0.92455 0.93708 0.91221 0.92173 0.90041 0.94342 0.84063 0.84917 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.27 6.49 2.66 -69.08 -0.18 6.30 16 3 H 0.05 1.26 6.34 -51.93 -0.33 0.93 16 4 C -0.53 -13.82 8.37 -34.44 -0.29 -14.11 16 5 H 0.06 1.71 7.65 -52.49 -0.40 1.31 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -23.77 11.32 55.43 0.63 -23.14 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.55 -12.17 2.86 -177.60 -0.51 -12.68 16 13 C 0.11 2.15 9.80 59.85 0.59 2.74 16 14 C 0.34 7.25 7.74 -87.68 -0.68 6.57 16 15 N -0.58 -11.61 9.80 -11.36 -0.11 -11.72 16 16 C 0.11 1.99 6.25 -84.18 -0.53 1.46 16 17 C 0.14 1.93 7.22 -4.97 -0.04 1.89 16 18 N -0.84 -10.58 9.61 -11.41 -0.11 -10.69 16 19 C -0.32 -5.53 11.08 29.02 0.32 -5.21 16 20 S 0.09 1.75 21.38 -107.50 -2.30 -0.55 16 21 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 22 H 0.01 0.32 8.14 -51.92 -0.42 -0.10 16 23 H 0.04 0.80 6.66 -51.93 -0.35 0.46 16 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.28 6.43 -51.93 -0.33 0.94 16 27 H 0.06 1.08 7.61 -51.93 -0.40 0.68 16 28 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.35 4.63 8.99 -39.29 -0.35 4.28 16 31 H 0.34 3.18 9.08 -39.29 -0.36 2.82 16 32 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -27.91 280.93 -7.83 -35.74 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.08 Total: 5.15 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.57 Total: -1.79 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.10 Total: -58.24 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.30 Total: -0.55 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.91 -7.83 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628850.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.149 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds