Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46881 * 2 1 4 4 C 1.50698 * 109.46878 * 120.00028 * 2 1 3 5 5 H 1.07994 * 120.00176 * 120.00203 * 4 2 1 6 6 C 1.37880 * 119.99745 * 299.99550 * 4 2 1 7 7 N 1.31513 * 120.00088 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99713 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47379 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46852 * 120.00501 * 8 6 4 11 11 H 1.48500 * 109.47116 * 240.00009 * 8 6 4 12 12 N 1.46503 * 109.47133 * 239.99815 * 2 1 3 13 13 C 1.46501 * 120.00051 * 300.00294 * 12 2 1 14 14 C 1.38604 * 119.99792 * 120.00059 * 12 2 1 15 15 N 1.29696 * 124.94749 * 180.27740 * 14 12 2 16 16 C 1.32119 * 116.86510 * 180.22436 * 15 14 12 17 17 C 1.50697 * 122.71059 * 179.75474 * 16 15 14 18 18 N 1.46905 * 109.47066 * 274.73776 * 17 16 15 19 19 C 1.33335 * 114.58060 * 359.48881 * 16 15 14 20 20 S 1.70964 * 124.95410 * 359.97438 * 14 12 2 21 21 H 1.08993 * 109.47298 * 300.00598 * 1 2 3 22 22 H 1.09011 * 109.47014 * 60.00120 * 1 2 3 23 23 H 1.08998 * 109.46881 * 180.02562 * 1 2 3 24 24 H 0.97001 * 120.00025 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46834 * 269.99839 * 13 12 2 26 26 H 1.09000 * 109.47151 * 29.99558 * 13 12 2 27 27 H 1.08998 * 109.47133 * 150.00325 * 13 12 2 28 28 H 1.09001 * 109.47558 * 154.73939 * 17 16 15 29 29 H 1.08998 * 109.47216 * 34.73601 * 17 16 15 30 30 H 1.00901 * 110.99869 * 56.04737 * 18 17 16 31 31 H 1.00896 * 110.99543 * 179.97438 * 18 17 16 32 32 H 1.07994 * 125.95317 * 180.28631 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3224 -1.1195 4.0080 9 1 3.1482 -2.2856 3.6039 10 1 3.1471 -0.1856 4.8161 11 1 1.1677 -1.5864 4.8165 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.8153 -0.0171 -2.1085 15 7 3.2945 -0.5315 -3.1984 16 6 4.0412 0.2559 -3.9521 17 6 4.6681 -0.2070 -5.2420 18 7 5.9497 -0.8652 -4.9550 19 6 4.1907 1.4947 -3.4822 20 16 3.3036 1.6151 -1.9650 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7082 1.1610 3.4843 25 1 2.4157 -2.7377 -0.9717 26 1 0.6904 -2.3002 -0.9846 27 1 1.6239 -2.2853 -2.5002 28 1 4.8381 0.6514 -5.8919 29 1 4.0007 -0.9117 -5.7379 30 1 5.8277 -1.6254 -4.3028 31 1 6.3900 -1.1852 -5.8046 32 1 4.7567 2.2864 -3.9503 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070628850.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = 31.090526 kcal Electronic energy + Delta-G solvation = -15243.010489 eV Core-core repulsion = 12750.631283 eV Total energy + Delta-G solvation = -2492.379206 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.67060 -38.40168 -35.45746 -34.56110 -31.59305 -30.09297 -28.02419 -27.33050 -26.45973 -23.97469 -21.81289 -20.34177 -18.84362 -18.39334 -17.30709 -16.80801 -16.71233 -16.10491 -15.57029 -15.35094 -14.71422 -14.55914 -14.11349 -13.89305 -13.53794 -13.16133 -12.99912 -12.97091 -12.78359 -12.50440 -12.34572 -12.14839 -11.99060 -11.32418 -10.68721 -10.57174 -10.43103 -10.06307 -9.59994 -8.38755 -8.09489 -6.35917 0.22795 0.41390 1.11055 1.39970 1.43120 1.53237 2.03975 2.17533 2.43051 3.08558 3.61454 3.92995 4.27150 4.35615 4.52440 4.62792 4.67177 4.72141 4.86013 4.91206 4.94052 5.01155 5.23560 5.39766 5.58906 5.74512 6.00382 6.11195 6.15237 6.49426 6.60754 6.71272 7.13811 7.36229 8.83858 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.034006 B = 0.006540 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.184435 B = 4280.231381 C = 4354.019415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.274 3.726 3 H 0.028 0.972 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.568 5.568 13 C 0.117 3.883 14 C 0.316 3.684 15 N -0.582 5.582 16 C 0.097 3.903 17 C 0.147 3.853 18 N -0.848 5.848 19 C -0.304 4.304 20 S 0.065 5.935 21 H 0.077 0.923 22 H 0.026 0.974 23 H 0.044 0.956 24 H 0.268 0.732 25 H 0.039 0.961 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.341 0.659 31 H 0.357 0.643 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -1.477 -11.353 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.173 3.827 3 H 0.045 0.955 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.174 4.174 7 N -0.548 5.548 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.200 1.200 12 N -0.284 5.284 13 C -0.028 4.028 14 C -0.054 4.054 15 N -0.312 5.312 16 C -0.034 4.034 17 C 0.014 3.986 18 N -0.380 5.380 19 C -0.447 4.447 20 S 0.314 5.686 21 H 0.096 0.904 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.061 0.939 30 H 0.153 0.847 31 H 0.172 0.828 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.730 -0.491 -10.168 10.842 hybrid contribution 0.053 -1.428 -0.007 1.429 sum 3.784 -1.919 -10.175 11.024 Atomic orbital electron populations 1.21966 0.96734 1.00394 1.00609 1.18839 0.92072 0.91542 0.80283 0.95471 1.21516 1.32282 1.13325 0.91017 0.92831 1.25572 0.94821 0.95535 1.01494 1.69960 1.36656 1.23415 1.24737 0.85479 0.78271 0.78520 0.79204 1.19759 1.20603 1.19961 1.46733 1.49253 1.11904 1.20542 1.21419 1.00233 0.80128 1.00996 1.23833 0.95386 0.94224 0.91976 1.66299 1.20959 1.37344 1.06562 1.20131 0.95867 0.89483 0.97944 1.20215 0.89287 0.99482 0.89646 1.58674 1.23664 1.36728 1.18920 1.26415 1.14201 1.03192 1.00861 1.84227 1.49834 1.10393 1.24123 0.90421 0.95505 0.93737 0.92256 0.94223 0.90740 0.91071 0.87581 0.93882 0.84715 0.82773 0.79146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.35 8.95 71.98 0.64 -5.71 16 2 C 0.27 13.39 2.66 44.25 0.12 13.51 16 3 H 0.03 1.45 6.34 -2.39 -0.02 1.44 16 4 C -0.54 -28.59 8.37 25.60 0.21 -28.38 16 5 H 0.05 2.88 7.65 -2.91 -0.02 2.85 16 6 C 0.03 1.39 5.30 84.66 0.45 1.84 16 7 N -0.91 -49.07 11.32 21.45 0.24 -48.83 16 8 Si 0.96 41.93 29.54 68.60 2.03 43.96 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 12 N -0.57 -24.98 2.86 -715.79 -2.05 -27.03 16 13 C 0.12 4.45 9.80 127.77 1.25 5.70 16 14 C 0.32 13.37 7.74 179.32 1.39 14.76 16 15 N -0.58 -22.62 9.80 -189.86 -1.86 -24.48 16 16 C 0.10 3.21 6.25 41.41 0.26 3.46 16 17 C 0.15 3.53 7.22 85.55 0.62 4.15 16 18 N -0.85 -18.94 9.61 -190.00 -1.83 -20.77 16 19 C -0.30 -9.84 11.08 66.71 0.74 -9.10 16 20 S 0.07 2.52 21.38 -56.49 -1.21 1.31 16 21 H 0.08 3.91 6.07 -2.39 -0.01 3.89 16 22 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.04 1.92 6.66 -2.39 -0.02 1.90 16 24 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.07 2.70 6.43 -2.39 -0.02 2.68 16 27 H 0.07 2.50 7.61 -2.39 -0.02 2.48 16 28 H 0.11 2.04 8.10 -2.39 -0.02 2.02 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.34 8.42 8.99 -89.69 -0.81 7.61 16 31 H 0.36 5.63 9.08 -89.70 -0.81 4.82 16 32 H 0.19 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -58.47 280.93 0.54 -57.93 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.47 Total: 17.66 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.68 Total: 0.24 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -5.49 Total: -121.10 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.21 Total: 1.31 kcal Total: -58.47 0.54 -57.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070628850.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.025 kcal (2) G-P(sol) polarization free energy of solvation -58.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds