Wall clock time and date at job start Mon Mar 30 2020 03:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46840 * 2 1 4 4 H 1.09003 * 109.46945 * 184.79350 * 3 2 1 5 5 C 1.50694 * 109.47324 * 304.79570 * 3 2 1 6 6 H 1.08007 * 119.99871 * 120.00189 * 5 3 2 7 7 C 1.37873 * 120.00005 * 299.99922 * 5 3 2 8 8 N 1.31513 * 120.00224 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46819 * 90.00105 * 9 7 5 11 11 H 1.48498 * 109.47321 * 210.00271 * 9 7 5 12 12 H 1.48501 * 109.46919 * 330.00689 * 9 7 5 13 13 S 1.81006 * 109.46989 * 64.79945 * 3 2 1 14 14 C 1.76198 * 100.00223 * 71.00753 * 13 3 2 15 15 N 1.31286 * 126.48181 * 4.95345 * 14 13 3 16 16 N 1.28527 * 109.85409 * 179.88109 * 15 14 13 17 17 C 1.30305 * 110.07874 * 0.39086 * 16 15 14 18 18 C 1.50696 * 126.34040 * 179.76142 * 17 16 15 19 19 N 1.36534 * 126.48318 * 185.26328 * 14 13 3 20 20 C 1.46502 * 127.14310 * 359.96216 * 19 14 13 21 21 H 1.09002 * 109.47090 * 185.69450 * 1 2 3 22 22 H 1.08997 * 109.47117 * 305.69044 * 1 2 3 23 23 H 1.09001 * 109.47216 * 65.69169 * 1 2 3 24 24 H 1.08997 * 109.46745 * 239.99800 * 2 1 3 25 25 H 1.08998 * 109.46716 * 119.99759 * 2 1 3 26 26 H 0.97001 * 120.00381 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47349 * 270.00265 * 18 17 16 28 28 H 1.09002 * 109.46973 * 30.00274 * 18 17 16 29 29 H 1.08996 * 109.46850 * 149.99808 * 18 17 16 30 30 H 1.09001 * 109.46609 * 90.00259 * 20 19 14 31 31 H 1.08995 * 109.47190 * 209.99749 * 20 19 14 32 32 H 1.08992 * 109.47119 * 330.00365 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 -0.0859 5 6 1.4430 2.1864 -1.1667 6 1 0.8328 3.0607 -0.9945 7 6 1.6759 1.7508 -2.4539 8 7 2.4185 0.6859 -2.6636 9 14 0.9353 2.6725 -3.9002 10 1 1.8792 3.7264 -4.3512 11 1 0.6829 1.7241 -5.0148 12 1 -0.3449 3.2996 -3.4843 13 16 1.5560 2.2535 1.5441 14 6 2.6208 1.4206 2.6741 15 7 3.5541 0.5490 2.3693 16 7 4.1393 0.1438 3.4395 17 6 3.6135 0.7210 4.4828 18 6 4.0173 0.5088 5.9190 19 7 2.6275 1.5550 4.0328 20 6 1.7587 2.4144 4.8409 21 1 -0.3633 -1.0226 0.1020 22 1 -0.3633 0.5995 0.8346 23 1 -0.3634 0.4230 -0.9366 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5821 0.3792 -3.5692 27 1 3.4322 -0.3066 6.3443 28 1 5.0771 0.2582 5.9653 29 1 3.8348 1.4214 6.4863 30 1 0.8608 1.8632 5.1203 31 1 2.2897 2.7241 5.7410 32 1 1.4793 3.2950 4.2627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071137170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:42 Heat of formation + Delta-G solvation = 63.777455 kcal Electronic energy + Delta-G solvation = -15331.647138 eV Core-core repulsion = 12840.685343 eV Total energy + Delta-G solvation = -2490.961795 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.38161 -34.96834 -34.55453 -32.09456 -31.31210 -27.82835 -27.16314 -26.95803 -23.82038 -22.18109 -20.65617 -20.02065 -17.50041 -16.18630 -16.08438 -15.58458 -14.89848 -14.12844 -13.64774 -13.48884 -13.24631 -13.09416 -12.76129 -12.55866 -12.51108 -12.03208 -11.21847 -11.00728 -10.88997 -10.59659 -10.48968 -10.17805 -9.96530 -9.89873 -9.83623 -9.27796 -9.11145 -8.90868 -8.45504 -6.78998 -6.13234 -4.23461 1.91012 2.06752 2.97179 3.25366 3.28585 3.32191 3.33787 3.51223 4.34030 4.57683 4.67750 4.97127 5.08594 5.18137 5.34948 5.41734 5.64691 5.84218 6.12341 6.37724 6.41207 6.58334 6.63679 7.07304 7.09048 7.20534 7.36964 7.53718 7.68076 7.90079 8.09526 8.73278 9.15053 9.38877 10.92107 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043999 B = 0.006604 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.230925 B = 4239.111507 C = 4421.014683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.109 4.109 3 C 0.106 3.894 4 H 0.064 0.936 5 C -0.513 4.513 6 H 0.065 0.935 7 C 0.076 3.924 8 N -0.877 5.877 9 Si 0.902 3.098 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 S -0.064 6.064 14 C 0.180 3.820 15 N -0.288 5.288 16 N -0.290 5.290 17 C 0.152 3.848 18 C -0.057 4.057 19 N -0.477 5.477 20 C 0.078 3.922 21 H 0.023 0.977 22 H 0.042 0.958 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.029 0.971 26 H 0.266 0.734 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 2.503 14.280 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.149 4.149 3 C -0.022 4.022 4 H 0.082 0.918 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.130 4.130 8 N -0.514 5.514 9 Si 0.729 3.271 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 S 0.166 5.834 14 C -0.193 4.193 15 N -0.131 5.131 16 N -0.131 5.131 17 C -0.117 4.117 18 C -0.116 4.116 19 N -0.173 5.173 20 C -0.065 4.065 21 H 0.042 0.958 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.117 0.883 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.035 2.361 13.517 13.872 hybrid contribution -0.295 0.340 -0.178 0.484 sum -2.330 2.701 13.339 13.808 Atomic orbital electron populations 1.21674 0.97391 0.98118 1.01804 1.21629 0.94839 0.96965 1.01500 1.21201 1.00534 0.94444 0.85988 0.91841 1.20516 1.33194 1.12589 0.88999 0.91718 1.24836 0.94827 0.94943 0.98364 1.69904 1.36960 1.22937 1.21610 0.86423 0.79573 0.79498 0.81576 1.20402 1.20957 1.19659 1.85320 1.44947 1.49630 1.03461 1.27377 1.03360 1.02998 0.85579 1.74811 1.07312 1.11740 1.19234 1.73929 1.22661 1.21791 0.94678 1.24912 0.92364 0.95518 0.98923 1.20086 1.03295 1.02454 0.85779 1.46352 1.29564 1.35178 1.06190 1.21995 0.94022 0.94783 0.95706 0.95784 0.93878 0.92113 0.88335 0.95255 0.92409 0.90145 0.89085 0.90961 0.90238 0.89496 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.38 37.16 0.35 -2.60 16 2 C -0.11 -2.71 5.33 -26.73 -0.14 -2.85 16 3 C 0.11 2.70 1.95 -27.89 -0.05 2.64 16 4 H 0.06 1.82 7.94 -51.91 -0.41 1.41 16 5 C -0.51 -13.56 7.20 -34.44 -0.25 -13.81 16 6 H 0.06 1.69 7.71 -52.48 -0.40 1.28 16 7 C 0.08 2.01 5.28 -17.82 -0.09 1.91 16 8 N -0.88 -24.43 11.37 55.43 0.63 -23.80 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 S -0.06 -1.36 19.83 -107.50 -2.13 -3.49 16 14 C 0.18 3.77 7.66 -88.34 -0.68 3.10 16 15 N -0.29 -6.77 10.43 30.68 0.32 -6.45 16 16 N -0.29 -6.11 12.18 33.00 0.40 -5.71 16 17 C 0.15 2.50 8.07 -153.99 -1.24 1.25 16 18 C -0.06 -0.57 10.25 36.00 0.37 -0.20 16 19 N -0.48 -7.85 3.21 -120.91 -0.39 -8.24 16 20 C 0.08 0.84 10.92 59.85 0.65 1.49 16 21 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.04 0.90 6.94 -51.93 -0.36 0.54 16 23 H 0.06 1.42 7.29 -51.93 -0.38 1.04 16 24 H 0.10 2.69 6.21 -51.93 -0.32 2.37 16 25 H 0.03 0.73 6.72 -51.93 -0.35 0.38 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.52 7.27 -51.93 -0.38 0.15 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.64 7.25 -51.93 -0.38 0.26 16 32 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 LS Contribution 279.98 15.07 4.22 4.22 Total: -1.00 -31.59 279.98 -7.27 -38.87 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.22 Total: -1.92 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.09 Total: -9.06 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.96 Total: -44.19 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.13 Total: -3.49 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.59 -7.27 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071137170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.645 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds