Wall clock time and date at job start Mon Mar 30 2020 03:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46840 * 2 1 4 4 H 1.09003 * 109.46945 * 184.79350 * 3 2 1 5 5 C 1.50694 * 109.47324 * 304.79570 * 3 2 1 6 6 H 1.08007 * 119.99871 * 120.00189 * 5 3 2 7 7 C 1.37873 * 120.00005 * 299.99922 * 5 3 2 8 8 N 1.31513 * 120.00224 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46819 * 90.00105 * 9 7 5 11 11 H 1.48498 * 109.47321 * 210.00271 * 9 7 5 12 12 H 1.48501 * 109.46919 * 330.00689 * 9 7 5 13 13 S 1.81006 * 109.46989 * 64.79945 * 3 2 1 14 14 C 1.76198 * 100.00223 * 71.00753 * 13 3 2 15 15 N 1.31286 * 126.48181 * 4.95345 * 14 13 3 16 16 N 1.28527 * 109.85409 * 179.88109 * 15 14 13 17 17 C 1.30305 * 110.07874 * 0.39086 * 16 15 14 18 18 C 1.50696 * 126.34040 * 179.76142 * 17 16 15 19 19 N 1.36534 * 126.48318 * 185.26328 * 14 13 3 20 20 C 1.46502 * 127.14310 * 359.96216 * 19 14 13 21 21 H 1.09002 * 109.47090 * 185.69450 * 1 2 3 22 22 H 1.08997 * 109.47117 * 305.69044 * 1 2 3 23 23 H 1.09001 * 109.47216 * 65.69169 * 1 2 3 24 24 H 1.08997 * 109.46745 * 239.99800 * 2 1 3 25 25 H 1.08998 * 109.46716 * 119.99759 * 2 1 3 26 26 H 0.97001 * 120.00381 * 179.97438 * 8 7 5 27 27 H 1.09001 * 109.47349 * 270.00265 * 18 17 16 28 28 H 1.09002 * 109.46973 * 30.00274 * 18 17 16 29 29 H 1.08996 * 109.46850 * 149.99808 * 18 17 16 30 30 H 1.09001 * 109.46609 * 90.00259 * 20 19 14 31 31 H 1.08995 * 109.47190 * 209.99749 * 20 19 14 32 32 H 1.08992 * 109.47119 * 330.00365 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4437 -0.0859 5 6 1.4430 2.1864 -1.1667 6 1 0.8328 3.0607 -0.9945 7 6 1.6759 1.7508 -2.4539 8 7 2.4185 0.6859 -2.6636 9 14 0.9353 2.6725 -3.9002 10 1 1.8792 3.7264 -4.3512 11 1 0.6829 1.7241 -5.0148 12 1 -0.3449 3.2996 -3.4843 13 16 1.5560 2.2535 1.5441 14 6 2.6208 1.4206 2.6741 15 7 3.5541 0.5490 2.3693 16 7 4.1393 0.1438 3.4395 17 6 3.6135 0.7210 4.4828 18 6 4.0173 0.5088 5.9190 19 7 2.6275 1.5550 4.0328 20 6 1.7587 2.4144 4.8409 21 1 -0.3633 -1.0226 0.1020 22 1 -0.3633 0.5995 0.8346 23 1 -0.3634 0.4230 -0.9366 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.5821 0.3792 -3.5692 27 1 3.4322 -0.3066 6.3443 28 1 5.0771 0.2582 5.9653 29 1 3.8348 1.4214 6.4863 30 1 0.8608 1.8632 5.1203 31 1 2.2897 2.7241 5.7410 32 1 1.4793 3.2950 4.2627 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071137170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:42 Heat of formation + Delta-G solvation = 44.870358 kcal Electronic energy + Delta-G solvation = -15332.467011 eV Core-core repulsion = 12840.685343 eV Total energy + Delta-G solvation = -2491.781668 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.80479 -36.83853 -35.94951 -33.48289 -33.13518 -29.16974 -28.89386 -28.11314 -25.77924 -23.67683 -22.15006 -21.77708 -19.04431 -17.86186 -17.50616 -17.17472 -16.69895 -15.59142 -15.30324 -15.02256 -14.55978 -14.39536 -14.06969 -13.77029 -13.72199 -13.25331 -12.84425 -12.84087 -12.65384 -12.41368 -12.28614 -12.00860 -11.77657 -11.46550 -11.20714 -11.12273 -10.84149 -10.71619 -10.45997 -8.45382 -8.16346 -6.34587 0.33302 0.69418 1.45237 1.45524 1.52689 1.58825 1.80037 1.84271 2.42148 3.12969 3.52695 3.76482 4.06521 4.31533 4.50442 4.51490 4.60765 4.64041 4.68803 4.71445 4.91715 5.00280 5.09509 5.16470 5.29223 5.34598 5.59572 5.64022 5.87460 5.90919 6.05877 6.68033 7.32010 7.68274 8.89217 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.043999 B = 0.006604 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.230925 B = 4239.111507 C = 4421.014683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.099 4.099 3 C 0.099 3.901 4 H 0.015 0.985 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.029 3.971 8 N -0.910 5.910 9 Si 0.967 3.033 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.260 1.260 13 S -0.024 6.024 14 C 0.154 3.846 15 N -0.337 5.337 16 N -0.345 5.345 17 C 0.178 3.822 18 C -0.056 4.056 19 N -0.470 5.470 20 C 0.064 3.936 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.020 0.980 26 H 0.266 0.734 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.565 3.675 16.677 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.139 4.139 3 C -0.030 4.030 4 H 0.033 0.967 5 C -0.563 4.563 6 H 0.086 0.914 7 C -0.173 4.173 8 N -0.548 5.548 9 Si 0.791 3.209 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.185 1.185 13 S 0.206 5.794 14 C -0.222 4.222 15 N -0.181 5.181 16 N -0.185 5.185 17 C -0.093 4.093 18 C -0.115 4.115 19 N -0.165 5.165 20 C -0.076 4.076 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.411 3.548 15.954 16.696 hybrid contribution 0.202 -0.031 -0.706 0.735 sum -3.209 3.517 15.248 15.974 Atomic orbital electron populations 1.21556 0.95133 0.99582 1.01603 1.21448 0.96632 0.96368 0.99443 1.20864 0.97692 0.95406 0.88992 0.96665 1.20762 1.33114 1.12650 0.89770 0.91434 1.25681 0.95023 0.95574 1.01043 1.70059 1.38179 1.24437 1.22095 0.85421 0.79110 0.78214 0.78171 1.20108 1.20685 1.18451 1.84731 1.44817 1.49103 1.00751 1.27216 1.03679 1.03634 0.87687 1.74686 1.08722 1.13210 1.21433 1.73827 1.24749 1.24424 0.95523 1.26104 0.90086 0.92608 1.00467 1.20461 1.04015 1.05271 0.81751 1.46679 1.29792 1.35236 1.04784 1.22516 0.94627 0.94103 0.96366 0.93788 0.92510 0.93390 0.91514 0.96156 0.92451 0.87829 0.88391 0.87081 0.88209 0.85164 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 9.38 71.98 0.67 -4.71 16 2 C -0.10 -5.09 5.33 30.60 0.16 -4.92 16 3 C 0.10 5.24 1.95 29.85 0.06 5.30 16 4 H 0.02 0.93 7.94 -2.39 -0.02 0.92 16 5 C -0.52 -28.20 7.20 25.60 0.18 -28.02 16 6 H 0.07 3.52 7.71 -2.91 -0.02 3.50 16 7 C 0.03 1.56 5.28 84.65 0.45 2.01 16 8 N -0.91 -52.57 11.37 21.45 0.24 -52.33 16 9 Si 0.97 42.45 29.54 68.60 2.03 44.47 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 13 S -0.02 -1.03 19.83 -56.49 -1.12 -2.16 16 14 C 0.15 6.45 7.66 179.55 1.38 7.82 16 15 N -0.34 -16.41 10.43 -56.86 -0.59 -17.01 16 16 N -0.35 -14.68 12.18 -49.52 -0.60 -15.28 16 17 C 0.18 5.46 8.07 137.63 1.11 6.57 16 18 C -0.06 -0.88 10.25 71.23 0.73 -0.15 16 19 N -0.47 -14.47 3.21 -536.45 -1.72 -16.19 16 20 C 0.06 1.12 10.92 127.77 1.39 2.51 16 21 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 2.33 6.94 -2.39 -0.02 2.31 16 23 H 0.05 2.23 7.29 -2.39 -0.02 2.21 16 24 H 0.07 3.84 6.21 -2.39 -0.01 3.83 16 25 H 0.02 1.04 6.72 -2.39 -0.02 1.03 16 26 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 27 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 0.93 7.27 -2.39 -0.02 0.91 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.13 1.15 7.25 -2.39 -0.02 1.13 16 32 H 0.09 1.65 7.86 -2.39 -0.02 1.63 16 Total: -1.00 -73.32 279.98 5.48 -67.84 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.11 Total: 4.23 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 6.14 Total: -13.58 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -2.68 Total: -100.81 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -1.03 SS G_CDS: -1.12 Total: -2.16 kcal Total: -73.32 5.48 -67.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071137170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.710 kcal (2) G-P(sol) polarization free energy of solvation -73.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds