Wall clock time and date at job start Mon Mar 30 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48498 * 109.47221 * 274.98602 * 3 2 1 5 5 H 1.48504 * 109.46999 * 34.98646 * 3 2 1 6 6 H 1.48495 * 109.47134 * 154.98735 * 3 2 1 7 7 C 1.40065 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 173.76266 * 7 2 1 9 9 C 1.41355 * 120.00334 * 354.03663 * 7 2 1 10 10 C 1.40807 * 120.20988 * 185.67498 * 9 7 2 11 11 N 1.31800 * 119.73592 * 179.75231 * 10 9 7 12 12 C 1.32370 * 120.17990 * 0.54800 * 11 10 9 13 13 C 1.50702 * 119.78206 * 179.70486 * 12 11 10 14 14 C 1.50689 * 109.47223 * 304.97502 * 13 12 11 15 15 C 1.38652 * 120.79139 * 269.72054 * 14 13 12 16 16 C 1.38206 * 119.16194 * 179.75552 * 15 14 13 17 17 N 1.31874 * 120.76377 * 0.53137 * 16 15 14 18 18 C 1.31864 * 121.72522 * 359.74233 * 17 16 15 19 19 C 1.38206 * 120.76875 * 359.97438 * 18 17 16 20 20 C 1.38879 * 120.43091 * 359.68199 * 12 11 10 21 21 N 1.31730 * 120.25484 * 0.04363 * 20 12 11 22 22 H 0.96996 * 119.99790 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.13022 * 0.02562 * 10 9 7 24 24 H 1.09003 * 109.46804 * 64.98212 * 13 12 11 25 25 H 1.08999 * 109.46762 * 184.97491 * 13 12 11 26 26 H 1.07993 * 120.42012 * 0.02562 * 15 14 13 27 27 H 1.08003 * 119.61812 * 180.29347 * 16 15 14 28 28 H 1.08001 * 119.62052 * 179.97438 * 18 17 16 29 29 H 1.07994 * 120.42195 * 180.02562 * 19 18 17 30 30 H 1.08000 * 119.87040 * 180.02562 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4953 2.6200 0.8028 6 1 3.5875 1.4121 0.5920 7 6 2.0075 -1.2130 -0.0005 8 1 3.0827 -1.2158 -0.1022 9 6 1.3065 -2.4340 0.1261 10 6 2.0118 -3.6467 0.2461 11 7 1.3488 -4.7792 0.3685 12 6 0.0251 -4.7787 0.3680 13 6 -0.7240 -6.0795 0.5019 14 6 -0.2665 -7.0352 -0.5696 15 6 -0.9013 -7.0770 -1.8016 16 6 -0.4507 -7.9630 -2.7617 17 7 0.5630 -8.7691 -2.5130 18 6 1.1867 -8.7607 -1.3513 19 6 0.7956 -7.8978 -0.3450 20 6 -0.6779 -3.5873 0.2452 21 7 -0.0325 -2.4450 0.1272 22 1 -0.4849 0.8400 0.0004 23 1 3.0918 -3.6485 0.2422 24 1 -0.5278 -6.5124 1.4829 25 1 -1.7929 -5.8961 0.3929 26 1 -1.7346 -6.4223 -2.0098 27 1 -0.9367 -7.9983 -3.7256 28 1 2.0128 -9.4360 -1.1840 29 1 1.3107 -7.8954 0.6042 30 1 -1.7578 -3.5974 0.2463 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074152622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:02 Heat of formation + Delta-G solvation = 65.478267 kcal Electronic energy + Delta-G solvation = -15829.233690 eV Core-core repulsion = 13202.901697 eV Total energy + Delta-G solvation = -2626.331993 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.85965 -38.92584 -34.66864 -33.46956 -31.96175 -30.85339 -30.49771 -27.92846 -24.93169 -23.21611 -22.80228 -22.06932 -20.70608 -17.67114 -16.39052 -16.14404 -15.74923 -15.24908 -15.09782 -14.64606 -14.17360 -13.53342 -13.38745 -13.20638 -12.69862 -12.12462 -11.96571 -11.66479 -11.47400 -11.38732 -11.03693 -10.81243 -10.39515 -9.81623 -9.58190 -9.20993 -9.17866 -9.11895 -8.81243 -7.83671 -7.47218 -6.59538 -4.75981 1.47875 1.64191 2.43531 2.91339 2.97430 3.00865 3.09439 3.77903 4.15803 4.53208 4.73565 5.06054 5.15586 5.46780 5.47599 5.57318 5.67583 5.83635 5.89826 5.96419 6.08900 6.19722 6.32527 6.40363 6.50483 6.78453 6.85167 6.96488 7.04935 7.15894 7.56575 7.94728 8.26358 8.32972 8.57393 9.17469 9.77274 10.04449 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045337 B = 0.005182 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.447163 B = 5401.563176 C = 5513.248990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.410 4.410 8 H 0.091 0.909 9 C 0.203 3.797 10 C -0.058 4.058 11 N -0.419 5.419 12 C -0.102 4.102 13 C -0.001 4.001 14 C -0.009 4.009 15 C -0.173 4.173 16 C 0.090 3.910 17 N -0.500 5.500 18 C 0.089 3.911 19 C -0.152 4.152 20 C 0.095 3.905 21 N -0.456 5.456 22 H 0.278 0.722 23 H 0.132 0.868 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.132 0.868 30 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -6.870 -0.384 7.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.162 4.162 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.441 4.441 8 H 0.109 0.891 9 C 0.078 3.922 10 C -0.230 4.230 11 N -0.131 5.131 12 C -0.240 4.240 13 C -0.040 4.040 14 C -0.017 4.017 15 C -0.193 4.193 16 C -0.067 4.067 17 N -0.209 5.209 18 C -0.067 4.067 19 C -0.172 4.172 20 C -0.074 4.074 21 N -0.173 5.173 22 H 0.089 0.911 23 H 0.150 0.850 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.148 0.852 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.150 0.850 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.648 -7.286 -1.029 7.541 hybrid contribution 0.117 1.466 0.629 1.599 sum -1.531 -5.820 -0.400 6.032 Atomic orbital electron populations 1.70084 1.07442 1.28522 1.26820 1.26176 0.95006 1.01560 0.93480 0.86205 0.80618 0.80215 0.79304 1.19234 1.19833 1.18177 1.19704 0.95046 0.89295 1.40087 0.89111 1.19446 0.89351 0.93387 0.90045 1.23115 0.99075 0.89148 1.11620 1.67410 1.08168 1.30321 1.07200 1.20711 0.91035 0.93807 1.18460 1.19073 0.98107 0.91050 0.95759 1.20355 0.93344 0.92906 0.95138 1.22025 1.02226 1.00644 0.94374 1.22595 0.93230 0.92071 0.98808 1.67588 1.08301 1.23198 1.21859 1.22633 0.98052 0.97217 0.88826 1.21990 0.97460 0.96593 1.01173 1.23269 0.99621 0.89664 0.94864 1.69558 1.08060 1.24222 1.15437 0.91099 0.85023 0.91137 0.90590 0.85247 0.83419 0.83387 0.85023 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.03 11.51 55.55 0.64 -17.39 16 2 C 0.06 1.56 5.49 -17.34 -0.10 1.47 16 3 Si 0.91 17.59 29.56 -169.99 -5.03 12.56 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.41 -10.45 9.16 -37.71 -0.35 -10.79 16 8 H 0.09 2.13 7.86 -52.49 -0.41 1.71 16 9 C 0.20 5.39 6.54 -84.81 -0.55 4.84 16 10 C -0.06 -1.43 10.99 -16.59 -0.18 -1.62 16 11 N -0.42 -9.84 10.15 -8.58 -0.09 -9.93 16 12 C -0.10 -2.21 6.18 -82.12 -0.51 -2.72 16 13 C 0.00 -0.02 5.80 -29.04 -0.17 -0.19 16 14 C -0.01 -0.15 4.96 -104.32 -0.52 -0.67 16 15 C -0.17 -2.68 9.82 -39.44 -0.39 -3.07 16 16 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 17 N -0.50 -8.11 10.36 -13.25 -0.14 -8.25 16 18 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 19 C -0.15 -2.41 9.82 -39.44 -0.39 -2.80 16 20 C 0.10 2.20 10.84 -17.36 -0.19 2.02 16 21 N -0.46 -12.17 8.07 -10.94 -0.09 -12.26 16 22 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 23 H 0.13 2.97 8.06 -52.49 -0.42 2.54 16 24 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 25 H 0.08 1.11 7.83 -51.93 -0.41 0.70 16 26 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 28 H 0.15 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 30 H 0.13 2.53 7.94 -52.49 -0.42 2.11 16 LS Contribution 273.26 15.07 4.12 4.12 Total: -1.00 -29.69 273.26 -7.21 -36.90 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -2.91 Total: 5.47 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.73 Total: -11.23 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.33 Total: -47.82 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.69 -7.21 -36.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074152622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.380 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds