Wall clock time and date at job start Mon Mar 30 2020 03:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48498 * 109.47221 * 274.98602 * 3 2 1 5 5 H 1.48504 * 109.46999 * 34.98646 * 3 2 1 6 6 H 1.48495 * 109.47134 * 154.98735 * 3 2 1 7 7 C 1.40065 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 173.76266 * 7 2 1 9 9 C 1.41355 * 120.00334 * 354.03663 * 7 2 1 10 10 C 1.40807 * 120.20988 * 185.67498 * 9 7 2 11 11 N 1.31800 * 119.73592 * 179.75231 * 10 9 7 12 12 C 1.32370 * 120.17990 * 0.54800 * 11 10 9 13 13 C 1.50702 * 119.78206 * 179.70486 * 12 11 10 14 14 C 1.50689 * 109.47223 * 304.97502 * 13 12 11 15 15 C 1.38652 * 120.79139 * 269.72054 * 14 13 12 16 16 C 1.38206 * 119.16194 * 179.75552 * 15 14 13 17 17 N 1.31874 * 120.76377 * 0.53137 * 16 15 14 18 18 C 1.31864 * 121.72522 * 359.74233 * 17 16 15 19 19 C 1.38206 * 120.76875 * 359.97438 * 18 17 16 20 20 C 1.38879 * 120.43091 * 359.68199 * 12 11 10 21 21 N 1.31730 * 120.25484 * 0.04363 * 20 12 11 22 22 H 0.96996 * 119.99790 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.13022 * 0.02562 * 10 9 7 24 24 H 1.09003 * 109.46804 * 64.98212 * 13 12 11 25 25 H 1.08999 * 109.46762 * 184.97491 * 13 12 11 26 26 H 1.07993 * 120.42012 * 0.02562 * 15 14 13 27 27 H 1.08003 * 119.61812 * 180.29347 * 16 15 14 28 28 H 1.08001 * 119.62052 * 179.97438 * 18 17 16 29 29 H 1.07994 * 120.42195 * 180.02562 * 19 18 17 30 30 H 1.08000 * 119.87040 * 180.02562 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6178 0.0000 4 1 2.3834 2.1073 -1.3947 5 1 1.4953 2.6200 0.8028 6 1 3.5875 1.4121 0.5920 7 6 2.0075 -1.2130 -0.0005 8 1 3.0827 -1.2158 -0.1022 9 6 1.3065 -2.4340 0.1261 10 6 2.0118 -3.6467 0.2461 11 7 1.3488 -4.7792 0.3685 12 6 0.0251 -4.7787 0.3680 13 6 -0.7240 -6.0795 0.5019 14 6 -0.2665 -7.0352 -0.5696 15 6 -0.9013 -7.0770 -1.8016 16 6 -0.4507 -7.9630 -2.7617 17 7 0.5630 -8.7691 -2.5130 18 6 1.1867 -8.7607 -1.3513 19 6 0.7956 -7.8978 -0.3450 20 6 -0.6779 -3.5873 0.2452 21 7 -0.0325 -2.4450 0.1272 22 1 -0.4849 0.8400 0.0004 23 1 3.0918 -3.6485 0.2422 24 1 -0.5278 -6.5124 1.4829 25 1 -1.7929 -5.8961 0.3929 26 1 -1.7346 -6.4223 -2.0098 27 1 -0.9367 -7.9983 -3.7256 28 1 2.0128 -9.4360 -1.1840 29 1 1.3107 -7.8954 0.6042 30 1 -1.7578 -3.5974 0.2463 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074152622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:01 Heat of formation + Delta-G solvation = 47.410974 kcal Electronic energy + Delta-G solvation = -15830.017146 eV Core-core repulsion = 13202.901697 eV Total energy + Delta-G solvation = -2627.115450 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 241.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.21867 -40.58438 -36.32763 -35.00149 -33.80099 -32.17051 -32.01646 -29.52853 -26.59671 -24.80543 -24.20548 -23.64396 -22.21373 -19.51653 -17.99474 -17.45913 -17.13815 -16.83314 -16.41400 -16.28327 -15.84127 -15.08665 -14.69844 -14.48154 -14.34975 -13.58228 -13.35598 -13.32428 -13.10217 -12.93107 -12.55078 -12.24284 -12.00041 -11.57399 -11.45728 -11.01334 -10.45322 -10.38777 -9.98065 -9.67051 -9.30546 -8.39909 -6.64925 0.30947 0.37975 0.65020 1.09832 1.40087 1.50632 1.56273 2.17798 2.73671 2.96563 3.64619 3.71802 3.78553 3.97748 4.02407 4.17679 4.31988 4.34337 4.41824 4.60455 4.69906 4.77917 4.95933 4.99227 5.04287 5.13476 5.17783 5.32477 5.60504 5.75767 5.90432 6.09172 6.48232 6.70831 7.09008 7.32719 7.90845 8.29047 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.045337 B = 0.005182 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.447163 B = 5401.563176 C = 5513.248990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.022 3.978 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.443 4.443 8 H 0.100 0.900 9 C 0.173 3.827 10 C -0.080 4.080 11 N -0.424 5.424 12 C -0.089 4.089 13 C 0.003 3.997 14 C -0.028 4.028 15 C -0.180 4.180 16 C 0.084 3.916 17 N -0.517 5.517 18 C 0.084 3.916 19 C -0.162 4.162 20 C 0.079 3.921 21 N -0.488 5.488 22 H 0.285 0.715 23 H 0.143 0.857 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.145 0.855 27 H 0.175 0.825 28 H 0.174 0.826 29 H 0.138 0.862 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.836 -7.166 -0.580 7.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.201 4.201 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.474 4.474 8 H 0.118 0.882 9 C 0.048 3.952 10 C -0.249 4.249 11 N -0.136 5.136 12 C -0.229 4.229 13 C -0.036 4.036 14 C -0.036 4.036 15 C -0.199 4.199 16 C -0.072 4.072 17 N -0.227 5.227 18 C -0.072 4.072 19 C -0.181 4.181 20 C -0.089 4.089 21 N -0.206 5.206 22 H 0.096 0.904 23 H 0.160 0.840 24 H 0.101 0.899 25 H 0.121 0.879 26 H 0.163 0.837 27 H 0.193 0.807 28 H 0.192 0.808 29 H 0.156 0.844 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.775 -7.604 -1.224 7.903 hybrid contribution 0.075 1.380 0.679 1.540 sum -1.700 -6.224 -0.544 6.475 Atomic orbital electron populations 1.70158 1.09121 1.29935 1.27752 1.27110 0.95781 1.04897 0.92314 0.85026 0.79172 0.75106 0.79479 1.18613 1.19112 1.17522 1.20091 0.95751 0.90095 1.41513 0.88247 1.19836 0.89831 0.94526 0.91030 1.23285 0.99778 0.89210 1.12613 1.67510 1.09082 1.29724 1.07319 1.21418 0.90652 0.95598 1.15244 1.19143 0.98964 0.88728 0.96731 1.20426 0.94162 0.93500 0.95518 1.22270 1.02660 1.00951 0.94064 1.23075 0.92889 0.91407 0.99859 1.67659 1.08901 1.23780 1.22364 1.23066 0.98462 0.97301 0.88333 1.22159 0.97436 0.96798 1.01749 1.23831 1.01105 0.89502 0.94509 1.69502 1.08493 1.26151 1.16412 0.90412 0.83990 0.89886 0.87928 0.83693 0.80750 0.80844 0.84447 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.63 11.51 21.84 0.25 -38.38 16 2 C 0.02 1.07 5.49 85.30 0.47 1.54 16 3 Si 0.99 35.93 29.56 68.60 2.03 37.95 16 4 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 7 C -0.44 -23.03 9.16 23.48 0.21 -22.81 16 8 H 0.10 4.74 7.86 -2.91 -0.02 4.72 16 9 C 0.17 9.39 6.54 40.22 0.26 9.65 16 10 C -0.08 -3.98 10.99 85.33 0.94 -3.04 16 11 N -0.42 -19.77 10.15 -181.05 -1.84 -21.60 16 12 C -0.09 -3.79 6.18 42.63 0.26 -3.53 16 13 C 0.00 0.08 5.80 29.10 0.17 0.25 16 14 C -0.03 -0.86 4.96 -19.67 -0.10 -0.96 16 15 C -0.18 -5.19 9.82 22.36 0.22 -4.97 16 16 C 0.08 2.34 11.18 84.68 0.95 3.29 16 17 N -0.52 -15.80 10.36 -195.84 -2.03 -17.83 16 18 C 0.08 2.40 11.18 84.68 0.95 3.35 16 19 C -0.16 -4.85 9.82 22.36 0.22 -4.63 16 20 C 0.08 3.62 10.84 84.86 0.92 4.54 16 21 N -0.49 -26.40 8.07 -188.52 -1.52 -27.92 16 22 H 0.29 13.16 8.29 -92.71 -0.77 12.39 16 23 H 0.14 6.53 8.06 -2.91 -0.02 6.51 16 24 H 0.08 2.45 8.10 -2.39 -0.02 2.43 16 25 H 0.10 2.68 7.83 -2.39 -0.02 2.66 16 26 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 27 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 28 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 30 H 0.16 5.96 7.94 -2.91 -0.02 5.94 16 Total: -1.00 -64.01 273.26 3.51 -60.50 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 1.15 Total: 24.61 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 5.47 Total: -17.33 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -5.14 Total: -105.73 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.95 kcal Total: -64.01 3.51 -60.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074152622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.911 kcal (2) G-P(sol) polarization free energy of solvation -64.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds