Wall clock time and date at job start Mon Mar 30 2020 03:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 N 1.30305 * 126.34163 * 90.02928 * 3 2 1 5 5 N 1.28524 * 110.07735 * 179.97438 * 4 3 2 6 6 C 1.31279 * 109.86182 * 0.02562 * 5 4 3 7 7 S 1.76192 * 126.48644 * 180.02562 * 6 5 4 8 8 C 1.81001 * 100.00087 * 359.97375 * 7 6 5 9 9 C 1.50696 * 109.47158 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00051 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00192 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99445 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47370 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47435 * 119.99954 * 13 11 9 16 16 H 1.48506 * 109.47126 * 239.99731 * 13 11 9 17 17 N 1.36542 * 107.03065 * 359.97438 * 6 5 4 18 18 C 1.46500 * 127.14594 * 179.97438 * 17 6 5 19 19 C 1.53000 * 109.46902 * 90.02479 * 18 17 6 20 20 H 1.09002 * 109.46655 * 300.00203 * 1 2 3 21 21 H 1.08997 * 109.47152 * 59.99231 * 1 2 3 22 22 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46851 * 240.00311 * 2 1 3 24 24 H 1.08998 * 109.47354 * 120.00015 * 2 1 3 25 25 H 1.09000 * 109.46608 * 299.99574 * 8 7 6 26 26 H 1.08995 * 109.46795 * 60.00035 * 8 7 6 27 27 H 0.97002 * 119.99299 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.47403 * 210.02576 * 18 17 6 29 29 H 1.08999 * 109.46802 * 330.03239 * 18 17 6 30 30 H 1.09002 * 109.47180 * 180.02562 * 19 18 17 31 31 H 1.08997 * 109.47413 * 299.99777 * 19 18 17 32 32 H 1.09004 * 109.47212 * 60.00584 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1486 1.0496 5 7 2.7019 3.3118 0.6896 6 6 2.7286 3.3897 -0.6206 7 16 3.2224 4.7844 -1.5773 8 6 3.6343 5.9454 -0.2512 9 6 4.0954 7.2491 -0.8501 10 1 4.1364 7.3659 -1.9230 11 6 4.4658 8.2925 -0.0284 12 7 4.4162 8.1500 1.2781 13 14 5.0380 9.9082 -0.7708 14 1 5.0035 9.8120 -2.2523 15 1 4.1403 11.0036 -0.3244 16 1 6.4259 10.1934 -0.3259 17 7 2.3023 2.1850 -1.1016 18 6 2.1620 1.7928 -2.5061 19 6 3.4731 1.1750 -2.9964 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.7524 6.1208 0.3649 26 1 4.4302 5.5263 0.3644 27 1 4.6765 8.8842 1.8562 28 1 1.3584 1.0625 -2.6010 29 1 1.9275 2.6715 -3.1070 30 1 3.3690 0.8836 -4.0416 31 1 4.2767 1.9053 -2.9016 32 1 3.7078 0.2963 -2.3955 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075321757.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:19 Heat of formation + Delta-G solvation = 53.477259 kcal Electronic energy + Delta-G solvation = -14911.433650 eV Core-core repulsion = 12420.025206 eV Total energy + Delta-G solvation = -2491.408445 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.45162 -35.64627 -33.95783 -33.17798 -30.45090 -29.41973 -28.47229 -24.68667 -23.61955 -23.07842 -22.03666 -20.21370 -17.47813 -16.35699 -16.02740 -15.81554 -14.89351 -14.72697 -14.23924 -14.00740 -13.28827 -13.02018 -12.72681 -12.47639 -12.38379 -12.22608 -11.88271 -11.49454 -11.37781 -11.06676 -10.93315 -10.78843 -10.48768 -9.99836 -9.92233 -9.63553 -9.33264 -9.20110 -8.60076 -6.84723 -6.18992 -4.27393 1.87632 2.04780 2.91537 3.24675 3.27326 3.31545 3.34392 3.50107 4.33424 4.40858 4.52443 4.78916 4.83594 5.05921 5.10826 5.17244 5.31259 5.39399 5.47835 5.56223 5.63803 5.90778 5.94441 6.01366 6.18654 6.41207 7.08236 7.13846 7.25029 7.68807 7.93992 8.73645 9.13818 9.36093 10.91438 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.042621 B = 0.005585 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.801236 B = 5011.826074 C = 5478.363795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.029 4.029 3 C 0.160 3.840 4 N -0.288 5.288 5 N -0.292 5.292 6 C 0.178 3.822 7 S -0.061 6.061 8 C 0.080 3.920 9 C -0.526 4.526 10 H 0.067 0.933 11 C 0.071 3.929 12 N -0.881 5.881 13 Si 0.908 3.092 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.280 1.280 17 N -0.470 5.470 18 C 0.105 3.895 19 C -0.169 4.169 20 H 0.064 0.936 21 H 0.052 0.948 22 H 0.065 0.935 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.459 -15.479 -8.476 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.069 4.069 3 C -0.109 4.109 4 N -0.128 5.128 5 N -0.135 5.135 6 C -0.195 4.195 7 S 0.168 5.832 8 C -0.068 4.068 9 C -0.566 4.566 10 H 0.086 0.914 11 C -0.135 4.135 12 N -0.518 5.518 13 Si 0.734 3.266 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.206 1.206 17 N -0.166 5.166 18 C -0.018 4.018 19 C -0.227 4.227 20 H 0.083 0.917 21 H 0.071 0.929 22 H 0.084 0.916 23 H 0.096 0.904 24 H 0.114 0.886 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.230 -14.839 -8.021 17.660 hybrid contribution 0.124 0.342 -0.280 0.459 sum -5.106 -14.497 -8.301 17.468 Atomic orbital electron populations 1.21753 0.93935 1.02109 1.02740 1.19888 0.96325 0.86708 1.03995 1.24879 1.05646 0.97532 0.82880 1.73919 1.15350 0.99291 1.24263 1.74824 1.19565 1.12054 1.07086 1.27376 1.04041 0.92610 0.95503 1.85357 1.80350 1.02236 1.15226 1.21320 1.01277 0.92690 0.91463 1.20630 1.46769 0.95692 0.93536 0.91441 1.24949 0.94963 0.98857 0.94726 1.70005 1.46315 1.32704 1.02732 0.86288 0.78431 0.82467 0.79385 1.19434 1.20629 1.20633 1.46521 1.51135 1.10893 1.08020 1.21831 0.99616 1.01991 0.78412 1.22150 0.97212 1.01685 1.01694 0.91698 0.92865 0.91562 0.90420 0.88572 0.92949 0.92927 0.92333 0.88959 0.88323 0.90361 0.91013 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.90 37.16 0.37 -0.99 16 2 C -0.03 -0.31 6.14 -27.88 -0.17 -0.48 16 3 C 0.16 2.62 7.32 -153.99 -1.13 1.50 16 4 N -0.29 -6.08 12.18 33.00 0.40 -5.68 16 5 N -0.29 -6.94 11.60 30.68 0.36 -6.59 16 6 C 0.18 3.74 8.07 -88.34 -0.71 3.03 16 7 S -0.06 -1.30 21.73 -107.50 -2.34 -3.64 16 8 C 0.08 2.14 4.99 36.00 0.18 2.32 16 9 C -0.53 -14.64 9.13 -34.44 -0.31 -14.96 16 10 H 0.07 1.81 7.71 -52.48 -0.40 1.41 16 11 C 0.07 1.98 5.46 -17.82 -0.10 1.88 16 12 N -0.88 -26.07 13.29 55.43 0.74 -25.33 16 13 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 N -0.47 -7.69 2.81 -113.54 -0.32 -8.01 16 18 C 0.10 1.17 6.47 -4.04 -0.03 1.15 16 19 C -0.17 -1.65 10.24 37.16 0.38 -1.27 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 24 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 1.52 8.14 -51.92 -0.42 1.09 16 26 H 0.05 1.52 8.14 -51.92 -0.42 1.10 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.09 0.76 7.88 -51.93 -0.41 0.35 16 29 H 0.10 1.11 7.86 -51.93 -0.41 0.70 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 293.14 15.07 4.42 4.42 Total: -1.00 -32.96 293.14 -7.86 -40.82 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.57 Total: -4.25 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -1.52 Total: -7.82 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 1.17 Total: -45.60 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.30 SS G_CDS: -2.34 Total: -3.64 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.96 -7.86 -40.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321757.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.299 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds