Wall clock time and date at job start Mon Mar 30 2020 03:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47230 * 2 1 4 4 N 1.30305 * 126.34163 * 90.02928 * 3 2 1 5 5 N 1.28524 * 110.07735 * 179.97438 * 4 3 2 6 6 C 1.31279 * 109.86182 * 0.02562 * 5 4 3 7 7 S 1.76192 * 126.48644 * 180.02562 * 6 5 4 8 8 C 1.81001 * 100.00087 * 359.97375 * 7 6 5 9 9 C 1.50696 * 109.47158 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00051 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00192 * 180.02562 * 9 8 7 12 12 N 1.31523 * 119.99445 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47370 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47435 * 119.99954 * 13 11 9 16 16 H 1.48506 * 109.47126 * 239.99731 * 13 11 9 17 17 N 1.36542 * 107.03065 * 359.97438 * 6 5 4 18 18 C 1.46500 * 127.14594 * 179.97438 * 17 6 5 19 19 C 1.53000 * 109.46902 * 90.02479 * 18 17 6 20 20 H 1.09002 * 109.46655 * 300.00203 * 1 2 3 21 21 H 1.08997 * 109.47152 * 59.99231 * 1 2 3 22 22 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46851 * 240.00311 * 2 1 3 24 24 H 1.08998 * 109.47354 * 120.00015 * 2 1 3 25 25 H 1.09000 * 109.46608 * 299.99574 * 8 7 6 26 26 H 1.08995 * 109.46795 * 60.00035 * 8 7 6 27 27 H 0.97002 * 119.99299 * 180.02562 * 12 11 9 28 28 H 1.09000 * 109.47403 * 210.02576 * 18 17 6 29 29 H 1.08999 * 109.46802 * 330.03239 * 18 17 6 30 30 H 1.09002 * 109.47180 * 180.02562 * 19 18 17 31 31 H 1.08997 * 109.47413 * 299.99777 * 19 18 17 32 32 H 1.09004 * 109.47212 * 60.00584 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2903 2.1486 1.0496 5 7 2.7019 3.3118 0.6896 6 6 2.7286 3.3897 -0.6206 7 16 3.2224 4.7844 -1.5773 8 6 3.6343 5.9454 -0.2512 9 6 4.0954 7.2491 -0.8501 10 1 4.1364 7.3659 -1.9230 11 6 4.4658 8.2925 -0.0284 12 7 4.4162 8.1500 1.2781 13 14 5.0380 9.9082 -0.7708 14 1 5.0035 9.8120 -2.2523 15 1 4.1403 11.0036 -0.3244 16 1 6.4259 10.1934 -0.3259 17 7 2.3023 2.1850 -1.1016 18 6 2.1620 1.7928 -2.5061 19 6 3.4731 1.1750 -2.9964 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.7524 6.1208 0.3649 26 1 4.4302 5.5263 0.3644 27 1 4.6765 8.8842 1.8562 28 1 1.3584 1.0625 -2.6010 29 1 1.9275 2.6715 -3.1070 30 1 3.3690 0.8836 -4.0416 31 1 4.2767 1.9053 -2.9016 32 1 3.7078 0.2963 -2.3955 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075321757.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:19 Heat of formation + Delta-G solvation = 33.256597 kcal Electronic energy + Delta-G solvation = -14912.310484 eV Core-core repulsion = 12420.025206 eV Total energy + Delta-G solvation = -2492.285278 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.90886 -36.85024 -35.33148 -34.93985 -31.54388 -31.03835 -30.38057 -25.87906 -25.11580 -24.57691 -23.47980 -21.43184 -19.07907 -18.24279 -17.48332 -17.18315 -16.63309 -15.94546 -15.37079 -14.87738 -14.82158 -14.56612 -14.38973 -14.15582 -13.52585 -13.35646 -12.83001 -12.77179 -12.69807 -12.54634 -12.29349 -12.25536 -12.12441 -11.64610 -11.54946 -11.29378 -11.08936 -10.90595 -10.66907 -8.57855 -8.33517 -6.52073 0.23918 0.63518 1.40758 1.43199 1.43345 1.58138 1.73420 1.74648 2.36525 3.00984 3.34368 3.59592 3.91063 3.99634 4.25902 4.29646 4.30590 4.49757 4.56951 4.70970 4.86392 4.87069 4.96211 5.00378 5.05682 5.12650 5.18523 5.31485 5.51772 5.77641 5.87397 6.57518 7.17912 7.62697 8.79155 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.042621 B = 0.005585 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.801236 B = 5011.826074 C = 5478.363795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C 0.188 3.812 4 N -0.340 5.340 5 N -0.346 5.346 6 C 0.152 3.848 7 S -0.008 6.008 8 C 0.080 3.920 9 C -0.544 4.544 10 H 0.077 0.923 11 C 0.014 3.986 12 N -0.925 5.925 13 Si 0.986 3.014 14 H -0.255 1.255 15 H -0.274 1.274 16 H -0.274 1.274 17 N -0.460 5.460 18 C 0.090 3.910 19 C -0.164 4.164 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.101 0.899 23 H 0.117 0.883 24 H 0.104 0.896 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.271 0.729 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.042 0.958 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 -17.193 -11.199 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.083 4.083 4 N -0.180 5.180 5 N -0.189 5.189 6 C -0.224 4.224 7 S 0.221 5.779 8 C -0.069 4.069 9 C -0.584 4.584 10 H 0.095 0.905 11 C -0.188 4.188 12 N -0.562 5.562 13 Si 0.808 3.192 14 H -0.178 1.178 15 H -0.199 1.199 16 H -0.199 1.199 17 N -0.154 5.154 18 C -0.030 4.030 19 C -0.222 4.222 20 H 0.059 0.941 21 H 0.075 0.925 22 H 0.119 0.881 23 H 0.135 0.865 24 H 0.122 0.878 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.061 0.939 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.840 -16.588 -10.775 20.624 hybrid contribution 0.229 0.651 0.554 0.885 sum -5.612 -15.937 -10.220 19.746 Atomic orbital electron populations 1.21742 0.92448 1.04103 1.01780 1.20297 0.97350 0.82931 1.06338 1.26018 1.01736 0.98853 0.81699 1.73810 1.18134 0.99328 1.26684 1.74699 1.21101 1.14068 1.09007 1.27199 1.05710 0.94234 0.95237 1.84688 1.80738 1.00903 1.11592 1.20873 0.98408 0.94616 0.92979 1.21008 1.46931 0.96332 0.94088 0.90458 1.26058 0.94595 1.03105 0.95000 1.70154 1.47286 1.34227 1.04568 0.85098 0.77966 0.77009 0.79145 1.17843 1.19917 1.19926 1.46856 1.49451 1.09015 1.10123 1.22397 1.02037 1.03246 0.75313 1.22155 0.95149 1.00902 1.04019 0.94110 0.92454 0.88057 0.86501 0.87786 0.96671 0.96652 0.91995 0.84694 0.88392 0.86787 0.93898 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.90 71.98 0.71 -1.41 16 2 C -0.03 -0.53 6.14 29.85 0.18 -0.34 16 3 C 0.19 5.92 7.32 137.63 1.01 6.92 16 4 N -0.34 -14.75 12.18 -49.52 -0.60 -15.35 16 5 N -0.35 -17.29 11.60 -56.86 -0.66 -17.95 16 6 C 0.15 6.55 8.07 179.55 1.45 8.00 16 7 S -0.01 -0.35 21.73 -56.49 -1.23 -1.58 16 8 C 0.08 4.53 4.99 71.23 0.36 4.88 16 9 C -0.54 -31.16 9.13 25.60 0.23 -30.93 16 10 H 0.08 4.17 7.71 -2.91 -0.02 4.15 16 11 C 0.01 0.80 5.46 84.65 0.46 1.26 16 12 N -0.92 -56.90 13.29 21.45 0.28 -56.62 16 13 Si 0.99 43.50 29.54 68.60 2.03 45.52 16 14 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 N -0.46 -14.47 2.81 -513.12 -1.44 -15.91 16 18 C 0.09 1.73 6.47 86.38 0.56 2.29 16 19 C -0.16 -2.65 10.24 71.98 0.74 -1.91 16 20 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 21 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 22 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 23 H 0.12 1.23 7.93 -2.39 -0.02 1.22 16 24 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.01 0.94 8.14 -2.40 -0.02 0.92 16 26 H 0.02 0.95 8.14 -2.40 -0.02 0.93 16 27 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.14 1.49 7.88 -2.39 -0.02 1.48 16 29 H 0.10 1.94 7.86 -2.39 -0.02 1.92 16 30 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -77.73 293.14 5.17 -72.56 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: 1.10 Total: 0.56 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 5.70 Total: -11.23 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -2.42 Total: -105.83 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.23 Total: -1.58 kcal Total: -77.73 5.17 -72.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075321757.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.812 kcal (2) G-P(sol) polarization free energy of solvation -77.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds