Wall clock time and date at job start Mon Mar 30 2020 03:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29389 * 125.58659 * 2 1 4 4 N 1.40162 * 108.14517 * 179.97438 * 3 2 1 5 5 C 1.34784 * 126.35051 * 180.02562 * 4 3 2 6 6 O 1.21538 * 119.99953 * 179.75051 * 5 4 3 7 7 N 1.34771 * 119.99547 * 0.02562 * 5 4 3 8 8 C 1.46506 * 119.99515 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.46931 * 180.02562 * 8 7 5 10 10 H 1.08003 * 119.99962 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00200 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99569 * 359.97438 * 11 9 8 13 13 Si 1.86790 * 120.00138 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47675 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47348 * 119.99771 * 13 11 9 16 16 H 1.48505 * 109.46905 * 239.99775 * 13 11 9 17 17 C 1.34940 * 107.30250 * 0.26028 * 4 3 2 18 18 O 1.21727 * 126.30803 * 179.70358 * 17 4 3 19 19 N 1.34815 * 107.39074 * 359.58569 * 17 4 3 20 20 N 1.36604 * 125.83320 * 180.16429 * 19 17 4 21 21 H 1.08995 * 109.47504 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.46814 * 120.02724 * 1 2 3 23 23 H 1.08997 * 109.46919 * 240.02435 * 1 2 3 24 24 H 0.96999 * 120.00409 * 0.02562 * 7 5 4 25 25 H 1.08996 * 109.47564 * 300.00635 * 8 7 5 26 26 H 1.09000 * 109.46872 * 60.00432 * 8 7 5 27 27 H 0.97002 * 119.99797 * 180.02562 * 12 11 9 28 28 H 1.00893 * 111.00275 * 0.30200 * 20 19 17 29 29 H 1.00900 * 111.00025 * 124.26040 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2600 1.0522 0.0000 4 7 3.5971 0.6321 0.0006 5 6 4.6847 1.4283 0.0013 6 8 5.7968 0.9380 0.0063 7 7 4.5388 2.7681 0.0019 8 6 5.7210 3.6336 0.0032 9 6 5.2869 5.0767 0.0044 10 1 4.2357 5.3244 0.0046 11 6 6.2319 6.0808 0.0052 12 7 7.5119 5.7791 0.0055 13 14 5.6939 7.8696 0.0074 14 1 4.2106 7.9405 0.0073 15 1 6.2220 8.5439 1.2205 16 1 6.2214 8.5466 -1.2046 17 6 3.5939 -0.7173 -0.0049 18 8 4.5730 -1.4404 -0.0112 19 7 2.3064 -1.1171 0.0005 20 7 1.8711 -2.4119 0.0008 21 1 -0.3634 1.0276 -0.0005 22 1 -0.3633 -0.5143 -0.8898 23 1 -0.3633 -0.5134 0.8902 24 1 3.6513 3.1594 0.0023 25 1 6.3171 3.4331 0.8934 26 1 6.3182 3.4341 -0.8865 27 1 8.1767 6.4855 0.0064 28 1 2.6487 -3.0548 0.0013 29 1 1.2569 -2.5868 0.7820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075618916.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:36 Heat of formation + Delta-G solvation = 42.307892 kcal Electronic energy + Delta-G solvation = -17019.514956 eV Core-core repulsion = 13981.328957 eV Total energy + Delta-G solvation = -3038.185999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.97020 -39.15024 -37.61014 -36.20322 -34.36297 -32.87071 -32.29877 -30.04817 -28.69142 -27.24386 -23.95060 -22.42666 -21.40849 -20.53307 -18.91303 -17.78949 -17.47283 -16.31580 -16.12010 -15.65171 -15.01487 -14.79488 -14.50161 -14.12461 -13.89651 -13.28681 -12.94233 -12.45647 -12.28714 -12.23847 -12.00155 -11.66238 -10.98253 -10.93134 -10.63935 -10.35963 -9.88605 -9.65566 -9.41491 -8.81311 -8.64074 -8.01577 -6.18768 -4.25920 1.32130 1.50871 2.28508 2.67353 3.24090 3.30984 3.34676 3.67431 3.75591 4.02215 4.32355 4.72677 4.80307 4.99116 5.12312 5.17754 5.40260 5.58708 6.21513 6.30882 6.80552 7.01222 7.18678 7.38076 7.43444 7.67892 7.89347 7.97569 8.53893 8.70599 8.95298 9.39993 10.91516 Molecular weight = 241.10amu Principal moments of inertia in cm(-1) A = 0.041473 B = 0.005393 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.982429 B = 5190.914428 C = 5843.410834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.308 3.692 3 N -0.274 5.274 4 N -0.417 5.417 5 C 0.720 3.280 6 O -0.534 6.534 7 N -0.692 5.692 8 C 0.259 3.741 9 C -0.543 4.543 10 H 0.067 0.933 11 C 0.064 3.936 12 N -0.885 5.885 13 Si 0.908 3.092 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.650 3.350 18 O -0.508 6.508 19 N -0.408 5.408 20 N -0.569 5.569 21 H 0.104 0.896 22 H 0.099 0.901 23 H 0.091 0.909 24 H 0.402 0.598 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.266 0.734 28 H 0.380 0.620 29 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.054 -11.916 1.299 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.029 3.971 3 N -0.101 5.101 4 N -0.253 5.253 5 C 0.420 3.580 6 O -0.403 6.403 7 N -0.343 5.343 8 C 0.139 3.861 9 C -0.581 4.581 10 H 0.085 0.915 11 C -0.140 4.140 12 N -0.522 5.522 13 Si 0.735 3.265 14 H -0.195 1.195 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.348 3.652 18 O -0.375 6.375 19 N -0.227 5.227 20 N -0.199 5.199 21 H 0.123 0.877 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.237 0.763 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.198 0.802 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.325 -11.428 0.608 19.937 hybrid contribution -0.113 0.058 0.920 0.929 sum -16.438 -11.369 1.528 20.045 Atomic orbital electron populations 1.20483 0.82007 1.06144 1.04723 1.24311 0.96757 0.80107 0.95876 1.77171 0.87076 1.20309 1.25583 1.47182 1.04946 1.06045 1.67085 1.15579 0.80609 0.82441 0.79321 1.91034 1.20163 1.73653 1.55471 1.45890 1.13415 1.01922 1.73095 1.19280 0.81354 0.87145 0.98307 1.21214 0.93688 0.89752 1.53445 0.91477 1.24952 0.94670 0.99776 0.94596 1.69989 1.00078 1.33408 1.48717 0.86296 0.78831 0.83664 0.77745 1.19504 1.20777 1.20764 1.16747 0.83389 0.83464 0.81568 1.91140 1.34088 1.57454 1.54852 1.44669 1.06012 1.03578 1.68448 1.60357 1.21584 0.88777 1.49145 0.87742 0.88218 0.89026 0.76327 0.94990 0.94961 0.92386 0.80233 0.83020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.36 36.01 0.37 0.02 15 2 C 0.31 3.36 8.09 -154.16 -1.25 2.11 15 3 N -0.27 -4.11 11.80 32.97 0.39 -3.72 15 4 N -0.42 -8.11 3.62 -20.14 -0.07 -8.19 15 5 C 0.72 16.90 8.55 -86.92 -0.74 16.16 15 6 O -0.53 -14.66 15.88 -12.63 -0.20 -14.86 15 7 N -0.69 -15.93 5.55 -66.42 -0.37 -16.30 15 8 C 0.26 7.04 5.43 -5.19 -0.03 7.01 15 9 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 15 10 H 0.07 1.72 7.60 -52.48 -0.40 1.32 15 11 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 12 N -0.88 -26.09 13.29 55.43 0.74 -25.35 15 13 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 15 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 17 C 0.65 11.98 8.61 -86.74 -0.75 11.23 15 18 O -0.51 -11.05 16.52 -12.80 -0.21 -11.27 15 19 N -0.41 -5.07 3.72 -13.57 -0.05 -5.12 15 20 N -0.57 -4.54 10.40 60.35 0.63 -3.91 15 21 H 0.10 0.43 8.14 -51.93 -0.42 0.01 15 22 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 15 23 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 15 24 H 0.40 8.26 7.77 -40.82 -0.32 7.94 15 25 H 0.03 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.03 0.95 8.14 -51.93 -0.42 0.53 15 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 28 H 0.38 3.15 8.53 -181.37 -1.55 1.60 15 29 H 0.35 1.51 9.21 -181.36 -1.67 -0.15 15 LS Contribution 269.52 15.07 4.06 4.06 Total: -1.00 -36.83 269.52 -8.10 -44.93 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.18 Total: 0.83 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: -2.81 Total: 23.05 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 1.26 Total: -62.59 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.41 Total: -26.12 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -36.83 -8.10 -44.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075618916.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.241 kcal (2) G-P(sol) polarization free energy of solvation -36.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds