Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 115.56013 * 2 1 4 4 C 1.53002 * 117.50173 * 145.69310 * 2 1 3 5 5 H 1.09007 * 117.49482 * 359.97438 * 4 2 1 6 6 C 1.50696 * 117.49977 * 214.97883 * 4 2 1 7 7 O 1.21285 * 119.99904 * 28.89861 * 6 4 2 8 8 N 1.34774 * 120.00110 * 208.89094 * 6 4 2 9 9 C 1.46501 * 120.00244 * 180.02562 * 8 6 4 10 10 C 1.50691 * 109.47416 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00082 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00380 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99370 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00290 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47143 * 60.00179 * 14 12 10 16 16 H 1.48498 * 109.47313 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47057 * 300.00253 * 14 12 10 18 18 C 1.53002 * 60.00174 * 107.48859 * 4 2 1 19 19 H 1.08994 * 117.49992 * 252.51256 * 18 4 2 20 20 C 1.50696 * 117.49824 * 107.51477 * 18 4 2 21 21 O 1.20829 * 120.00219 * 238.50082 * 20 18 4 22 22 O 1.34235 * 120.00237 * 58.49282 * 20 18 4 23 23 H 1.09003 * 109.47314 * 274.30584 * 1 2 3 24 24 H 1.08995 * 109.47253 * 34.31225 * 1 2 3 25 25 H 1.09007 * 109.46772 * 154.30905 * 1 2 3 26 26 H 1.09004 * 109.47085 * 195.74690 * 3 2 1 27 27 H 1.08994 * 109.47719 * 315.75427 * 3 2 1 28 28 H 1.09001 * 109.46829 * 75.75848 * 3 2 1 29 29 H 0.97002 * 119.99826 * 0.02562 * 8 6 4 30 30 H 1.09004 * 109.47216 * 300.00408 * 9 8 6 31 31 H 1.08996 * 109.46951 * 60.00131 * 9 8 6 32 32 H 0.97003 * 119.99022 * 179.97438 * 13 12 10 33 33 H 0.96696 * 117.00410 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 0.7649 5 1 1.6112 -1.8583 1.2685 6 6 3.5293 -0.7812 1.4607 7 8 3.7233 0.3465 1.8627 8 7 4.4698 -1.7304 1.6364 9 6 5.7264 -1.4002 2.3133 10 6 6.5987 -2.6271 2.3797 11 1 6.2521 -3.5596 1.9593 12 6 7.8400 -2.5591 2.9762 13 7 8.2623 -1.4235 3.4877 14 14 8.9216 -4.0798 3.0578 15 1 9.2108 -4.5561 1.6813 16 1 10.1953 -3.7452 3.7441 17 1 8.2184 -5.1475 3.8135 18 6 2.2365 -1.1210 -0.7651 19 1 1.6112 -1.8584 -1.2684 20 6 3.5293 -0.7816 -1.4609 21 8 3.5770 0.1534 -2.2248 22 8 4.6282 -1.5179 -1.2320 23 1 -0.3634 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.2392 1.2813 -0.2789 27 1 1.6828 2.0257 -0.7170 28 1 2.1188 1.8171 0.9961 29 1 4.3147 -2.6322 1.3146 30 1 6.2431 -0.6170 1.7585 31 1 5.5138 -1.0500 3.3234 32 1 9.1354 -1.3758 3.9076 33 1 5.4340 -1.2616 -1.7010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = -113.502467 kcal Electronic energy + Delta-G solvation = -17767.060590 eV Core-core repulsion = 14793.365739 eV Total energy + Delta-G solvation = -2973.694851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78400 -38.91432 -36.98363 -35.78713 -34.13771 -32.30980 -29.84956 -27.46983 -27.39151 -25.32000 -23.08037 -21.46153 -19.59390 -18.91276 -17.85864 -17.17335 -16.29514 -15.92304 -15.25068 -15.02301 -14.46031 -14.24436 -13.67761 -13.56608 -13.37372 -12.73404 -12.58018 -12.21270 -12.03329 -11.82341 -11.77214 -11.40693 -11.15643 -10.99243 -10.87852 -10.53493 -10.30850 -10.15852 -9.87359 -9.39886 -8.96351 -8.71597 -7.83796 -6.16155 -4.22613 2.29858 2.95934 3.17504 3.25199 3.30255 3.31585 3.54239 4.09267 4.35775 4.48359 4.64952 4.90794 5.03164 5.19983 5.42281 5.51079 5.57251 5.60461 5.80084 5.88590 5.97398 6.12778 6.23709 6.57881 6.73460 7.30920 7.46013 7.52124 7.68337 7.97880 8.07738 8.65469 8.78509 9.11245 9.43869 10.94039 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.006189 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.110889 B = 4523.186831 C = 4777.073789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.063 4.063 3 C -0.111 4.111 4 C -0.158 4.158 5 H 0.135 0.865 6 C 0.521 3.479 7 O -0.548 6.548 8 N -0.694 5.694 9 C 0.253 3.747 10 C -0.540 4.540 11 H 0.063 0.937 12 C 0.063 3.937 13 N -0.887 5.887 14 Si 0.904 3.096 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.145 4.145 19 H 0.147 0.853 20 C 0.509 3.491 21 O -0.512 6.512 22 O -0.497 6.497 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.393 0.607 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.266 0.734 33 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.113 -1.697 -8.156 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.063 4.063 3 C -0.167 4.167 4 C -0.179 4.179 5 H 0.153 0.847 6 C 0.304 3.696 7 O -0.427 6.427 8 N -0.340 5.340 9 C 0.132 3.868 10 C -0.578 4.578 11 H 0.081 0.919 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.731 3.269 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.164 4.164 19 H 0.164 0.836 20 C 0.351 3.649 21 O -0.400 6.400 22 O -0.308 6.308 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.226 0.774 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -13.093 -0.667 -7.742 15.225 hybrid contribution 1.181 -1.278 -0.398 1.785 sum -11.912 -1.945 -8.140 14.558 Atomic orbital electron populations 1.21390 0.90603 1.02439 1.02705 1.21657 0.95120 0.91759 0.97785 1.21404 1.00348 0.92568 1.02421 1.22704 0.99540 1.03705 0.91959 0.84727 1.19367 0.83969 0.85691 0.80530 1.90673 1.79662 1.21011 1.51391 1.46327 1.18316 1.12153 1.57247 1.19072 0.78736 0.96642 0.92346 1.21182 1.01469 0.95866 1.39317 0.91895 1.24949 0.97675 0.96447 0.94957 1.69971 1.19989 1.25058 1.37425 0.86482 0.79547 0.82575 0.78321 1.20092 1.21141 1.20098 1.22144 0.94617 1.05783 0.93882 0.83565 1.22223 0.84869 0.79134 0.78662 1.90697 1.85411 1.28658 1.35283 1.84590 1.21069 1.57413 1.67728 0.91190 0.91379 0.92040 0.91979 0.92650 0.90541 0.77415 0.95725 0.95659 0.92438 0.72837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.85 37.16 0.37 -0.70 16 2 C -0.06 -0.83 2.69 -154.51 -0.42 -1.24 16 3 C -0.11 -1.74 7.43 37.16 0.28 -1.47 16 4 C -0.16 -2.24 5.89 -91.77 -0.54 -2.78 16 5 H 0.14 1.51 8.14 -51.93 -0.42 1.09 16 6 C 0.52 10.28 5.88 -10.99 -0.06 10.22 16 7 O -0.55 -12.91 14.12 5.55 0.08 -12.83 16 8 N -0.69 -14.37 4.80 -61.48 -0.30 -14.67 16 9 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 10 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 16 11 H 0.06 1.57 7.60 -52.48 -0.40 1.18 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 14 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 15 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 C -0.15 -1.87 5.88 -91.77 -0.54 -2.41 16 19 H 0.15 1.37 8.05 -51.93 -0.42 0.95 16 20 C 0.51 7.93 6.00 36.00 0.22 8.15 16 21 O -0.51 -9.15 16.36 -18.75 -0.31 -9.46 16 22 O -0.50 -7.41 12.18 -39.27 -0.48 -7.89 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 25 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 26 H 0.06 1.17 5.31 -51.93 -0.28 0.90 16 27 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.08 1.27 7.44 -51.93 -0.39 0.89 16 29 H 0.39 7.19 8.32 -40.82 -0.34 6.85 16 30 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.41 4.88 9.10 45.56 0.41 5.30 16 LS Contribution 286.14 15.07 4.31 4.31 Total: -1.00 -33.45 286.14 -5.60 -39.05 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -3.48 Total: 7.82 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.15 Total: 3.23 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.44 Total: -39.90 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: -0.71 Total: -30.17 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.45 -5.60 -39.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.449 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds