Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 115.56013 * 2 1 4 4 C 1.53002 * 117.50173 * 145.69310 * 2 1 3 5 5 H 1.09007 * 117.49482 * 359.97438 * 4 2 1 6 6 C 1.50696 * 117.49977 * 214.97883 * 4 2 1 7 7 O 1.21285 * 119.99904 * 28.89861 * 6 4 2 8 8 N 1.34774 * 120.00110 * 208.89094 * 6 4 2 9 9 C 1.46501 * 120.00244 * 180.02562 * 8 6 4 10 10 C 1.50691 * 109.47416 * 180.02562 * 9 8 6 11 11 H 1.08004 * 120.00082 * 0.02562 * 10 9 8 12 12 C 1.37883 * 120.00380 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99370 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00290 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47143 * 60.00179 * 14 12 10 16 16 H 1.48498 * 109.47313 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47057 * 300.00253 * 14 12 10 18 18 C 1.53002 * 60.00174 * 107.48859 * 4 2 1 19 19 H 1.08994 * 117.49992 * 252.51256 * 18 4 2 20 20 C 1.50696 * 117.49824 * 107.51477 * 18 4 2 21 21 O 1.20829 * 120.00219 * 238.50082 * 20 18 4 22 22 O 1.34235 * 120.00237 * 58.49282 * 20 18 4 23 23 H 1.09003 * 109.47314 * 274.30584 * 1 2 3 24 24 H 1.08995 * 109.47253 * 34.31225 * 1 2 3 25 25 H 1.09007 * 109.46772 * 154.30905 * 1 2 3 26 26 H 1.09004 * 109.47085 * 195.74690 * 3 2 1 27 27 H 1.08994 * 109.47719 * 315.75427 * 3 2 1 28 28 H 1.09001 * 109.46829 * 75.75848 * 3 2 1 29 29 H 0.97002 * 119.99826 * 0.02562 * 8 6 4 30 30 H 1.09004 * 109.47216 * 300.00408 * 9 8 6 31 31 H 1.08996 * 109.46951 * 60.00131 * 9 8 6 32 32 H 0.97003 * 119.99022 * 179.97438 * 13 12 10 33 33 H 0.96696 * 117.00410 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 0.7649 5 1 1.6112 -1.8583 1.2685 6 6 3.5293 -0.7812 1.4607 7 8 3.7233 0.3465 1.8627 8 7 4.4698 -1.7304 1.6364 9 6 5.7264 -1.4002 2.3133 10 6 6.5987 -2.6271 2.3797 11 1 6.2521 -3.5596 1.9593 12 6 7.8400 -2.5591 2.9762 13 7 8.2623 -1.4235 3.4877 14 14 8.9216 -4.0798 3.0578 15 1 9.2108 -4.5561 1.6813 16 1 10.1953 -3.7452 3.7441 17 1 8.2184 -5.1475 3.8135 18 6 2.2365 -1.1210 -0.7651 19 1 1.6112 -1.8584 -1.2684 20 6 3.5293 -0.7816 -1.4609 21 8 3.5770 0.1534 -2.2248 22 8 4.6282 -1.5179 -1.2320 23 1 -0.3634 0.0772 1.0248 24 1 -0.3633 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4455 26 1 3.2392 1.2813 -0.2789 27 1 1.6828 2.0257 -0.7170 28 1 2.1188 1.8171 0.9961 29 1 4.3147 -2.6322 1.3146 30 1 6.2431 -0.6170 1.7585 31 1 5.5138 -1.0500 3.3234 32 1 9.1354 -1.3758 3.9076 33 1 5.4340 -1.2616 -1.7010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923734.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = -138.794449 kcal Electronic energy + Delta-G solvation = -17768.157332 eV Core-core repulsion = 14793.365739 eV Total energy + Delta-G solvation = -2974.791594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.03466 -40.36640 -38.31751 -37.05121 -36.06949 -34.31059 -30.97833 -29.31358 -28.46461 -26.69436 -24.83127 -22.99566 -21.11432 -20.13054 -19.18830 -18.66050 -17.88318 -17.29516 -16.98618 -16.63749 -15.98047 -15.82271 -15.07467 -14.79151 -14.51710 -14.25336 -13.88905 -13.85193 -13.61435 -13.32581 -13.00312 -12.85578 -12.67764 -12.56216 -12.27127 -12.18884 -11.72795 -11.49946 -11.29807 -10.97860 -10.76997 -10.56381 -9.75498 -8.27391 -6.43301 1.09082 1.44083 1.47809 1.56023 1.61924 1.95483 2.25117 2.41459 2.75142 3.07720 3.38254 3.53421 3.78736 4.07427 4.23282 4.37589 4.61872 4.71460 4.82451 4.90858 5.05524 5.07459 5.14097 5.26193 5.27981 5.42126 5.51992 5.56701 5.73486 5.87366 6.67844 6.90348 6.94462 7.25696 7.51871 8.84588 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.006189 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.110889 B = 4523.186831 C = 4777.073789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.063 4.063 3 C -0.110 4.110 4 C -0.159 4.159 5 H 0.179 0.821 6 C 0.515 3.485 7 O -0.594 6.594 8 N -0.687 5.687 9 C 0.272 3.728 10 C -0.550 4.550 11 H 0.084 0.916 12 C 0.004 3.996 13 N -0.933 5.933 14 Si 0.983 3.017 15 H -0.262 1.262 16 H -0.288 1.288 17 H -0.262 1.262 18 C -0.130 4.130 19 H 0.198 0.802 20 C 0.501 3.499 21 O -0.542 6.542 22 O -0.504 6.504 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.092 0.908 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.408 0.592 30 H -0.017 1.017 31 H -0.015 1.015 32 H 0.267 0.733 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.084 -4.420 -9.158 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.064 4.064 3 C -0.167 4.167 4 C -0.180 4.180 5 H 0.196 0.804 6 C 0.302 3.698 7 O -0.476 6.476 8 N -0.336 5.336 9 C 0.149 3.851 10 C -0.587 4.587 11 H 0.102 0.898 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.807 3.193 15 H -0.186 1.186 16 H -0.213 1.213 17 H -0.186 1.186 18 C -0.149 4.149 19 H 0.215 0.785 20 C 0.344 3.656 21 O -0.433 6.433 22 O -0.316 6.316 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.111 0.889 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.244 0.756 30 H 0.001 0.999 31 H 0.003 0.997 32 H 0.076 0.924 33 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -15.099 -3.425 -8.768 17.793 hybrid contribution 1.822 -0.313 -0.094 1.851 sum -13.277 -3.738 -8.862 16.395 Atomic orbital electron populations 1.21438 0.86791 1.04496 1.03714 1.21855 0.97576 0.89778 0.97180 1.21326 0.98466 0.95243 1.01658 1.22663 0.96715 1.05846 0.92754 0.80405 1.20374 0.85388 0.84530 0.79550 1.90657 1.80903 1.22997 1.53067 1.46039 1.16963 1.13346 1.57206 1.18464 0.80892 0.95710 0.90009 1.21560 1.01677 0.96394 1.39108 0.89810 1.26045 0.99392 0.99891 0.94219 1.70144 1.20603 1.27906 1.38557 0.85228 0.77019 0.78141 0.78948 1.18643 1.21345 1.18646 1.22487 0.93470 1.06393 0.92511 0.78535 1.22921 0.85770 0.78548 0.78329 1.90683 1.85920 1.29819 1.36894 1.84575 1.21684 1.57466 1.67888 0.90505 0.90686 0.88886 0.95986 0.90970 0.92331 0.75584 0.99941 0.99742 0.92377 0.71824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.85 71.98 0.71 -0.81 16 2 C -0.06 -1.50 2.69 -52.18 -0.14 -1.64 16 3 C -0.11 -3.49 7.43 71.98 0.53 -2.95 16 4 C -0.16 -4.08 5.89 -11.54 -0.07 -4.15 16 5 H 0.18 3.09 8.14 -2.38 -0.02 3.07 16 6 C 0.52 20.45 5.88 87.66 0.52 20.97 16 7 O -0.59 -29.36 14.12 -3.05 -0.04 -29.40 16 8 N -0.69 -28.74 4.80 -466.80 -2.24 -30.98 16 9 C 0.27 14.86 5.43 85.63 0.46 15.33 16 10 C -0.55 -29.56 9.28 25.60 0.24 -29.32 16 11 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 12 C 0.00 0.21 5.46 84.66 0.46 0.67 16 13 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 14 Si 0.98 42.04 29.54 68.60 2.03 44.06 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 16 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 18 C -0.13 -2.91 5.88 -11.54 -0.07 -2.98 16 19 H 0.20 2.45 8.05 -2.39 -0.02 2.43 16 20 C 0.50 15.12 6.00 71.23 0.43 15.55 16 21 O -0.54 -19.40 16.36 21.95 0.36 -19.04 16 22 O -0.50 -14.82 12.18 -51.46 -0.63 -15.45 16 23 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 0.99 8.04 -2.39 -0.02 0.97 16 25 H 0.09 0.78 7.90 -2.38 -0.02 0.76 16 26 H 0.02 0.85 5.31 -2.39 -0.01 0.83 16 27 H 0.07 1.97 8.09 -2.39 -0.02 1.95 16 28 H 0.06 2.02 7.44 -2.39 -0.02 2.00 16 29 H 0.41 14.42 8.32 -92.71 -0.77 13.64 16 30 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 31 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.42 10.21 9.10 -74.06 -0.67 9.53 16 Total: -1.00 -77.55 286.14 2.53 -75.01 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -0.30 Total: 21.22 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 3.07 Total: 10.66 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -1.96 Total: -87.07 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -0.31 Total: -63.89 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -77.55 2.53 -75.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923734.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.780 kcal (2) G-P(sol) polarization free energy of solvation -77.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds