Wall clock time and date at job start Mon Mar 30 2020 03:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 115.56249 * 2 1 4 4 C 1.53002 * 117.50083 * 214.31708 * 2 1 3 5 5 H 1.09006 * 117.49367 * 359.97438 * 4 2 1 6 6 C 1.50698 * 117.50275 * 145.02201 * 4 2 1 7 7 O 1.20816 * 120.00188 * 67.90781 * 6 4 2 8 8 O 1.34234 * 119.99667 * 247.91336 * 6 4 2 9 9 C 1.52999 * 117.49828 * 145.69208 * 2 1 3 10 10 H 1.09000 * 117.49511 * 215.00066 * 9 2 1 11 11 C 1.50698 * 117.49761 * 0.02562 * 9 2 1 12 12 O 1.21281 * 120.00066 * 359.97438 * 11 9 2 13 13 N 1.34778 * 119.99556 * 180.02562 * 11 9 2 14 14 C 1.46504 * 119.99599 * 179.97438 * 13 11 9 15 15 C 1.50701 * 109.46950 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00434 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00022 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00056 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00202 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47290 * 89.99697 * 19 17 15 21 21 H 1.48500 * 109.47101 * 210.00101 * 19 17 15 22 22 H 1.48509 * 109.46819 * 329.99745 * 19 17 15 23 23 H 1.08993 * 109.46927 * 274.31061 * 1 2 3 24 24 H 1.09004 * 109.47190 * 34.30990 * 1 2 3 25 25 H 1.09002 * 109.47062 * 154.30700 * 1 2 3 26 26 H 1.08994 * 109.47393 * 199.94006 * 3 2 1 27 27 H 1.08993 * 109.47278 * 319.94808 * 3 2 1 28 28 H 1.09005 * 109.46497 * 79.94596 * 3 2 1 29 29 H 0.96699 * 116.99736 * 180.02562 * 8 6 4 30 30 H 0.97000 * 120.00380 * 359.97438 * 13 11 9 31 31 H 1.09001 * 109.47381 * 59.99349 * 14 13 11 32 32 H 1.09002 * 109.46911 * 299.99449 * 14 13 11 33 33 H 0.96998 * 120.00228 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1209 -0.7651 5 1 1.6112 -1.8586 -1.2681 6 6 3.5293 -0.7810 -1.4609 7 8 4.5115 -0.5094 -0.8118 8 8 3.5897 -0.7799 -2.8019 9 6 2.2365 -1.1210 0.7649 10 1 3.1713 -0.8751 1.2685 11 6 1.3720 -2.1410 1.4602 12 8 0.1638 -2.0536 1.4006 13 7 1.9416 -3.1497 2.1491 14 6 1.1012 -4.1409 2.8255 15 6 1.9769 -5.1541 3.5167 16 1 3.0519 -5.0680 3.4585 17 6 1.4057 -6.1903 4.2245 18 7 0.0967 -6.2944 4.2967 19 14 2.4911 -7.4457 5.0819 20 1 2.7788 -6.9888 6.4652 21 1 1.7920 -8.7550 5.1284 22 1 3.7656 -7.5914 4.3336 23 1 -0.3633 0.0772 1.0247 24 1 -0.3634 0.8489 -0.5793 25 1 -0.3633 -0.9261 -0.4456 26 1 3.2184 1.2912 -0.3504 27 1 1.6374 2.0474 -0.6612 28 1 2.1851 1.7853 1.0120 29 1 4.4406 -0.5560 -3.2028 30 1 2.9079 -3.2194 2.1971 31 1 0.4721 -4.6452 2.0919 32 1 0.4717 -3.6416 3.5620 33 1 -0.3051 -7.0236 4.7943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:45 Heat of formation + Delta-G solvation = -115.701666 kcal Electronic energy + Delta-G solvation = -17188.185567 eV Core-core repulsion = 14214.395352 eV Total energy + Delta-G solvation = -2973.790215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.94598 -39.27099 -37.05002 -36.04254 -34.18597 -32.35894 -29.83010 -27.62482 -27.46731 -25.58526 -23.02795 -21.27587 -19.72530 -19.17668 -18.29395 -17.22727 -16.47445 -15.91416 -15.49220 -15.16964 -14.44622 -14.26145 -13.86377 -13.62026 -13.36873 -12.88783 -12.52683 -12.33054 -12.06917 -11.92519 -11.73199 -11.66802 -11.40120 -10.98300 -10.90997 -10.67360 -10.31834 -10.29322 -9.96113 -9.41337 -8.94541 -8.75082 -7.92002 -6.18192 -4.25056 1.91151 2.63592 3.14163 3.24114 3.30340 3.32948 3.76694 3.98427 4.34013 4.54468 4.59194 4.90217 5.02448 5.18058 5.18371 5.48094 5.54079 5.60474 5.80422 5.87330 5.97633 6.04554 6.20718 6.32632 6.62899 7.26679 7.39125 7.48350 7.64659 7.75836 7.94744 8.58498 8.74916 9.04064 9.41598 10.92002 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.032529 B = 0.005202 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.556162 B = 5381.137940 C = 5901.722685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.057 4.057 3 C -0.128 4.128 4 C -0.148 4.148 5 H 0.140 0.860 6 C 0.515 3.485 7 O -0.513 6.513 8 O -0.511 6.511 9 C -0.145 4.145 10 H 0.133 0.867 11 C 0.527 3.473 12 O -0.545 6.545 13 N -0.704 5.704 14 C 0.250 3.750 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.410 0.590 30 H 0.392 0.608 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 12.463 -11.115 17.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.058 4.058 3 C -0.185 4.185 4 C -0.167 4.167 5 H 0.158 0.842 6 C 0.358 3.642 7 O -0.401 6.401 8 O -0.322 6.322 9 C -0.167 4.167 10 H 0.151 0.849 11 C 0.311 3.689 12 O -0.424 6.424 13 N -0.352 5.352 14 C 0.129 3.871 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.268 0.732 30 H 0.225 0.775 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.412 12.335 -10.690 16.909 hybrid contribution 1.747 -0.818 0.244 1.944 sum 6.159 11.517 -10.446 16.724 Atomic orbital electron populations 1.21409 0.89329 1.01806 1.03469 1.21680 0.96533 0.89909 0.97662 1.21546 1.00260 0.93529 1.03135 1.21992 0.95521 1.06132 0.93099 0.84223 1.22253 0.89311 0.72427 0.80189 1.90712 1.37621 1.45183 1.66620 1.84526 1.42703 1.82537 1.22461 1.22666 1.02621 1.00174 0.91206 0.84904 1.19321 0.87897 0.81798 0.79913 1.90668 1.14183 1.75023 1.62568 1.46468 1.10914 1.26902 1.50872 1.19145 0.90512 0.85384 0.92049 1.21233 0.93192 1.10501 1.33327 0.91859 1.24942 0.95146 0.97769 0.96088 1.69970 1.09383 1.32013 1.40961 0.86408 0.80253 0.80393 0.79836 1.20425 1.20986 1.19736 0.90347 0.93192 0.90964 0.91977 0.91364 0.90949 0.73165 0.77486 0.95395 0.95347 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 8.09 37.16 0.30 -1.10 16 2 C -0.06 -0.74 2.70 -154.51 -0.42 -1.16 16 3 C -0.13 -1.38 9.59 37.16 0.36 -1.02 16 4 C -0.15 -1.98 5.65 -91.77 -0.52 -2.50 16 5 H 0.14 1.86 8.05 -51.93 -0.42 1.44 16 6 C 0.52 6.43 6.86 36.00 0.25 6.68 16 7 O -0.51 -7.47 15.91 -18.74 -0.30 -7.77 16 8 O -0.51 -4.90 13.42 -39.27 -0.53 -5.42 16 9 C -0.15 -2.20 5.42 -91.77 -0.50 -2.70 16 10 H 0.13 1.91 7.67 -51.93 -0.40 1.51 16 11 C 0.53 10.29 7.59 -10.99 -0.08 10.20 16 12 O -0.55 -12.13 13.10 5.56 0.07 -12.06 16 13 N -0.70 -14.87 5.55 -61.47 -0.34 -15.21 16 14 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 15 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 16 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 19 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.08 1.20 7.26 -51.93 -0.38 0.82 16 24 H 0.05 0.54 7.99 -51.93 -0.41 0.13 16 25 H 0.07 1.09 7.01 -51.93 -0.36 0.72 16 26 H 0.06 0.70 5.71 -51.93 -0.30 0.41 16 27 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.41 2.00 9.10 45.56 0.41 2.41 16 30 H 0.39 7.35 8.32 -40.82 -0.34 7.01 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -32.33 287.67 -5.51 -37.84 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.41 Total: 6.14 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.06 Total: 1.52 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.40 Total: -40.44 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.75 Total: -25.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.33 -5.51 -37.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.859 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds