Wall clock time and date at job start Mon Mar 30 2020 03:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 115.56249 * 2 1 4 4 C 1.53002 * 117.50083 * 214.31708 * 2 1 3 5 5 H 1.09006 * 117.49367 * 359.97438 * 4 2 1 6 6 C 1.50698 * 117.50275 * 145.02201 * 4 2 1 7 7 O 1.20816 * 120.00188 * 67.90781 * 6 4 2 8 8 O 1.34234 * 119.99667 * 247.91336 * 6 4 2 9 9 C 1.52999 * 117.49828 * 145.69208 * 2 1 3 10 10 H 1.09000 * 117.49511 * 215.00066 * 9 2 1 11 11 C 1.50698 * 117.49761 * 0.02562 * 9 2 1 12 12 O 1.21281 * 120.00066 * 359.97438 * 11 9 2 13 13 N 1.34778 * 119.99556 * 180.02562 * 11 9 2 14 14 C 1.46504 * 119.99599 * 179.97438 * 13 11 9 15 15 C 1.50701 * 109.46950 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00434 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00022 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00056 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00202 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47290 * 89.99697 * 19 17 15 21 21 H 1.48500 * 109.47101 * 210.00101 * 19 17 15 22 22 H 1.48509 * 109.46819 * 329.99745 * 19 17 15 23 23 H 1.08993 * 109.46927 * 274.31061 * 1 2 3 24 24 H 1.09004 * 109.47190 * 34.30990 * 1 2 3 25 25 H 1.09002 * 109.47062 * 154.30700 * 1 2 3 26 26 H 1.08994 * 109.47393 * 199.94006 * 3 2 1 27 27 H 1.08993 * 109.47278 * 319.94808 * 3 2 1 28 28 H 1.09005 * 109.46497 * 79.94596 * 3 2 1 29 29 H 0.96699 * 116.99736 * 180.02562 * 8 6 4 30 30 H 0.97000 * 120.00380 * 359.97438 * 13 11 9 31 31 H 1.09001 * 109.47381 * 59.99349 * 14 13 11 32 32 H 1.09002 * 109.46911 * 299.99449 * 14 13 11 33 33 H 0.96998 * 120.00228 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2365 -1.1209 -0.7651 5 1 1.6112 -1.8586 -1.2681 6 6 3.5293 -0.7810 -1.4609 7 8 4.5115 -0.5094 -0.8118 8 8 3.5897 -0.7799 -2.8019 9 6 2.2365 -1.1210 0.7649 10 1 3.1713 -0.8751 1.2685 11 6 1.3720 -2.1410 1.4602 12 8 0.1638 -2.0536 1.4006 13 7 1.9416 -3.1497 2.1491 14 6 1.1012 -4.1409 2.8255 15 6 1.9769 -5.1541 3.5167 16 1 3.0519 -5.0680 3.4585 17 6 1.4057 -6.1903 4.2245 18 7 0.0967 -6.2944 4.2967 19 14 2.4911 -7.4457 5.0819 20 1 2.7788 -6.9888 6.4652 21 1 1.7920 -8.7550 5.1284 22 1 3.7656 -7.5914 4.3336 23 1 -0.3633 0.0772 1.0247 24 1 -0.3634 0.8489 -0.5793 25 1 -0.3633 -0.9261 -0.4456 26 1 3.2184 1.2912 -0.3504 27 1 1.6374 2.0474 -0.6612 28 1 2.1851 1.7853 1.0120 29 1 4.4406 -0.5560 -3.2028 30 1 2.9079 -3.2194 2.1971 31 1 0.4721 -4.6452 2.0919 32 1 0.4717 -3.6416 3.5620 33 1 -0.3051 -7.0236 4.7943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:45 Heat of formation + Delta-G solvation = -139.469666 kcal Electronic energy + Delta-G solvation = -17189.216225 eV Core-core repulsion = 14214.395352 eV Total energy + Delta-G solvation = -2974.820873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.05073 -40.60347 -38.32677 -37.01150 -36.08872 -34.37159 -30.97936 -29.46193 -28.48789 -26.93885 -24.80336 -22.72061 -21.17066 -20.34787 -19.37170 -18.68296 -17.95695 -17.06813 -17.01860 -16.87015 -16.05249 -15.93101 -15.04793 -14.84204 -14.55999 -14.23194 -14.00705 -13.86307 -13.55338 -13.35623 -12.98349 -12.85217 -12.72551 -12.65570 -12.37602 -12.22296 -11.69738 -11.50551 -11.44145 -11.11178 -10.81228 -10.51973 -9.84433 -8.30527 -6.46832 0.89206 1.42431 1.43308 1.44977 1.55766 1.95742 2.31626 2.48968 2.65088 3.04486 3.38772 3.48159 3.73337 4.00480 4.04492 4.30337 4.53284 4.68244 4.77223 4.92882 4.98909 5.01155 5.09660 5.21299 5.23512 5.42920 5.52339 5.54916 5.67055 5.83560 6.63223 6.85385 6.95900 7.21511 7.41794 8.81506 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.032529 B = 0.005202 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.556162 B = 5381.137940 C = 5901.722685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.045 4.045 3 C -0.123 4.123 4 C -0.141 4.141 5 H 0.138 0.862 6 C 0.526 3.474 7 O -0.534 6.534 8 O -0.502 6.502 9 C -0.156 4.156 10 H 0.145 0.855 11 C 0.526 3.474 12 O -0.576 6.576 13 N -0.704 5.704 14 C 0.267 3.733 15 C -0.559 4.559 16 H 0.080 0.920 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.258 1.258 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.433 0.567 30 H 0.406 0.594 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.530 13.242 -11.995 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.046 4.046 3 C -0.180 4.180 4 C -0.161 4.161 5 H 0.155 0.845 6 C 0.370 3.630 7 O -0.424 6.424 8 O -0.316 6.316 9 C -0.177 4.177 10 H 0.162 0.838 11 C 0.313 3.687 12 O -0.457 6.457 13 N -0.353 5.353 14 C 0.145 3.855 15 C -0.597 4.597 16 H 0.098 0.902 17 C -0.193 4.193 18 N -0.567 5.567 19 Si 0.806 3.194 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.182 1.182 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.097 0.903 29 H 0.295 0.705 30 H 0.241 0.759 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.429 13.148 -11.616 18.685 hybrid contribution 1.067 -1.009 0.420 1.527 sum 7.496 12.138 -11.196 18.135 Atomic orbital electron populations 1.21345 0.89833 1.02148 1.02444 1.21835 0.96200 0.90792 0.95724 1.21567 1.00129 0.92062 1.04193 1.21982 0.96278 1.06179 0.91662 0.84452 1.21856 0.88267 0.71944 0.80950 1.90716 1.38098 1.46295 1.67333 1.84465 1.44538 1.81901 1.20708 1.22432 1.02694 1.00238 0.92337 0.83764 1.20048 0.88020 0.81679 0.78970 1.90656 1.15978 1.75736 1.63335 1.46239 1.11109 1.26717 1.51245 1.18578 0.90487 0.85944 0.90490 1.21613 0.94034 1.10703 1.33338 0.90207 1.26013 0.96545 1.00050 0.96691 1.70120 1.11628 1.33031 1.41955 0.85182 0.78434 0.77095 0.78668 1.19571 1.20755 1.18220 0.92517 0.89938 0.93043 0.92165 0.89010 0.90328 0.70457 0.75927 0.98988 0.99008 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.66 8.09 71.98 0.58 -2.07 16 2 C -0.04 -1.10 2.70 -52.18 -0.14 -1.24 16 3 C -0.12 -2.29 9.59 71.98 0.69 -1.60 16 4 C -0.14 -3.57 5.65 -11.54 -0.07 -3.64 16 5 H 0.14 3.55 8.05 -2.38 -0.02 3.53 16 6 C 0.53 11.84 6.86 71.24 0.49 12.33 16 7 O -0.53 -14.29 15.91 22.00 0.35 -13.94 16 8 O -0.50 -8.06 13.42 -51.46 -0.69 -8.75 16 9 C -0.16 -4.61 5.42 -11.54 -0.06 -4.67 16 10 H 0.14 3.97 7.67 -2.39 -0.02 3.95 16 11 C 0.53 21.07 7.59 87.66 0.67 21.73 16 12 O -0.58 -26.77 13.10 -3.03 -0.04 -26.81 16 13 N -0.70 -30.52 5.55 -466.78 -2.59 -33.11 16 14 C 0.27 14.70 5.43 85.63 0.46 15.16 16 15 C -0.56 -30.74 9.28 25.60 0.24 -30.50 16 16 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 17 C 0.01 0.38 5.46 84.65 0.46 0.84 16 18 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 19 Si 0.98 42.61 29.54 68.60 2.03 44.63 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 22 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 23 H 0.06 1.75 7.26 -2.39 -0.02 1.73 16 24 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 25 H 0.05 1.56 7.01 -2.39 -0.02 1.54 16 26 H 0.06 1.18 5.71 -2.39 -0.01 1.17 16 27 H 0.09 1.31 8.02 -2.39 -0.02 1.29 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.43 2.71 9.10 -74.06 -0.67 2.04 16 30 H 0.41 15.22 8.32 -92.71 -0.77 14.45 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -71.37 287.67 2.36 -69.00 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -0.30 Total: 18.21 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: 3.32 Total: 6.35 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -2.30 Total: -88.69 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.38 Total: -49.51 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -71.37 2.36 -69.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.466 kcal (2) G-P(sol) polarization free energy of solvation -71.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds