Wall clock time and date at job start Mon Mar 30 2020 03:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 115.56190 * 2 1 4 4 C 1.52995 * 117.49895 * 145.69073 * 2 1 3 5 5 H 1.09001 * 117.50106 * 359.97438 * 4 2 1 6 6 C 1.50696 * 117.50098 * 214.97903 * 4 2 1 7 7 O 1.20835 * 119.99955 * 313.97392 * 6 4 2 8 8 O 1.34231 * 120.00153 * 133.97179 * 6 4 2 9 9 C 1.52998 * 60.03453 * 107.47852 * 4 2 1 10 10 H 1.08995 * 117.50057 * 107.50002 * 9 4 2 11 11 C 1.50703 * 117.49824 * 252.50200 * 9 4 2 12 12 O 1.21283 * 120.00158 * 68.60748 * 11 9 4 13 13 N 1.34777 * 119.99911 * 248.60104 * 11 9 4 14 14 C 1.46495 * 119.99959 * 179.97438 * 13 11 9 15 15 C 1.50705 * 109.47217 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99658 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00060 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99875 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99677 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46789 * 90.00627 * 19 17 15 21 21 H 1.48498 * 109.46981 * 209.99666 * 19 17 15 22 22 H 1.48492 * 109.47719 * 330.00304 * 19 17 15 23 23 H 1.09002 * 109.47017 * 325.70505 * 1 2 3 24 24 H 1.09003 * 109.47235 * 85.69627 * 1 2 3 25 25 H 1.08992 * 109.47315 * 205.70054 * 1 2 3 26 26 H 1.08998 * 109.47101 * 211.16236 * 3 2 1 27 27 H 1.08993 * 109.46907 * 331.16088 * 3 2 1 28 28 H 1.08998 * 109.46725 * 91.16016 * 3 2 1 29 29 H 0.96702 * 116.99539 * 180.02562 * 8 6 4 30 30 H 0.97006 * 119.99877 * 0.02562 * 13 11 9 31 31 H 1.08997 * 109.47556 * 299.99996 * 14 13 11 32 32 H 1.08997 * 109.47190 * 60.00295 * 14 13 11 33 33 H 0.96998 * 119.99442 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1210 0.7649 5 1 1.6112 -1.8583 1.2686 6 6 3.5292 -0.7812 1.4608 7 8 4.3767 -0.1426 0.8828 8 8 3.7392 -1.1878 2.7226 9 6 2.2367 -1.1218 -0.7650 10 1 3.1718 -0.8766 -1.2683 11 6 1.3724 -2.1419 -1.4604 12 8 0.1642 -2.0548 -1.4009 13 7 1.9421 -3.1510 -2.1487 14 6 1.1020 -4.1429 -2.8242 15 6 1.9778 -5.1564 -3.5148 16 1 3.0528 -5.0704 -3.4560 17 6 1.4068 -6.1939 -4.2208 18 7 0.0978 -6.2995 -4.2912 19 14 2.4926 -7.4496 -5.0775 20 1 2.7815 -8.5706 -4.1473 21 1 1.7929 -7.9713 -6.2789 22 1 3.7662 -6.8055 -5.4871 23 1 -0.3633 0.8490 0.5791 24 1 -0.3634 0.0771 -1.0248 25 1 -0.3633 -0.9259 0.4456 26 1 3.1402 1.3286 -0.5318 27 1 1.5348 2.0964 -0.4957 28 1 2.3657 1.6990 1.0275 29 1 4.5835 -0.9454 3.1271 30 1 2.9085 -3.2209 -2.1961 31 1 0.4732 -4.6469 -2.0902 32 1 0.4722 -3.6444 -3.5610 33 1 -0.3038 -7.0292 -4.7882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:47 Heat of formation + Delta-G solvation = -115.981008 kcal Electronic energy + Delta-G solvation = -17190.925848 eV Core-core repulsion = 14217.123519 eV Total energy + Delta-G solvation = -2973.802329 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.92009 -39.26380 -37.08392 -35.96031 -34.19573 -32.36879 -29.82871 -27.61774 -27.42005 -25.58357 -23.03577 -21.30951 -19.70761 -19.11178 -18.33533 -17.22478 -16.47639 -15.74966 -15.49810 -15.17856 -14.47945 -14.26058 -13.81882 -13.65483 -13.31680 -12.90609 -12.53036 -12.26081 -12.08826 -11.93096 -11.70562 -11.66248 -11.43560 -10.99288 -10.91155 -10.57448 -10.32067 -10.29587 -9.98709 -9.42163 -8.94381 -8.75876 -7.93069 -6.18910 -4.25829 1.86866 2.70191 3.14682 3.23468 3.29772 3.32299 3.78891 3.98568 4.33495 4.56259 4.59784 4.91469 5.05915 5.15770 5.17585 5.49932 5.59037 5.60037 5.82915 5.88706 6.03978 6.08199 6.22788 6.36095 6.63022 7.25908 7.37909 7.47686 7.63586 7.78569 7.94004 8.57164 8.74010 9.02836 9.40817 10.91291 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031901 B = 0.005214 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.503239 B = 5368.655665 C = 5883.676272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.053 4.053 3 C -0.120 4.120 4 C -0.150 4.150 5 H 0.137 0.863 6 C 0.513 3.487 7 O -0.514 6.514 8 O -0.511 6.511 9 C -0.144 4.144 10 H 0.132 0.868 11 C 0.526 3.474 12 O -0.544 6.544 13 N -0.705 5.705 14 C 0.250 3.750 15 C -0.545 4.545 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.273 1.273 23 H 0.049 0.951 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.410 0.590 30 H 0.392 0.608 31 H 0.028 0.972 32 H 0.029 0.971 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 11.847 10.896 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.054 4.054 3 C -0.177 4.177 4 C -0.170 4.170 5 H 0.155 0.845 6 C 0.357 3.643 7 O -0.402 6.402 8 O -0.323 6.323 9 C -0.165 4.165 10 H 0.150 0.850 11 C 0.310 3.690 12 O -0.423 6.423 13 N -0.352 5.352 14 C 0.129 3.871 15 C -0.583 4.583 16 H 0.081 0.919 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.068 0.932 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.268 0.732 30 H 0.224 0.776 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.621 11.815 10.483 16.457 hybrid contribution 1.740 -0.828 -0.201 1.938 sum 6.361 10.986 10.281 16.336 Atomic orbital electron populations 1.21419 0.89399 1.01796 1.03474 1.21702 0.96331 0.90013 0.97362 1.21481 1.00922 0.93166 1.02169 1.21965 0.95488 1.06375 0.93171 0.84490 1.22249 0.87620 0.75166 0.79307 1.90700 1.45724 1.37672 1.66123 1.84523 1.44573 1.74024 1.29177 1.22759 1.02598 1.00352 0.90801 0.85045 1.19344 0.87938 0.81802 0.79924 1.90669 1.14175 1.74994 1.62501 1.46467 1.10868 1.26876 1.50971 1.19145 0.90518 0.85358 0.92069 1.21229 0.93173 1.10434 1.33448 0.91875 1.24944 0.95150 0.97768 0.96087 1.69971 1.09389 1.31862 1.41071 0.86406 0.80253 0.81170 0.79047 1.20444 1.20973 1.19732 0.93166 0.90289 0.91003 0.90946 0.91264 0.92296 0.73158 0.77553 0.95391 0.95336 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 8.03 37.16 0.30 -1.12 16 2 C -0.05 -0.70 2.70 -154.47 -0.42 -1.12 16 3 C -0.12 -1.35 8.42 37.16 0.31 -1.04 16 4 C -0.15 -2.01 5.65 -91.78 -0.52 -2.52 16 5 H 0.14 1.84 8.05 -51.93 -0.42 1.42 16 6 C 0.51 6.38 7.55 36.00 0.27 6.65 16 7 O -0.51 -7.26 15.38 -18.76 -0.29 -7.55 16 8 O -0.51 -5.03 13.42 -39.26 -0.53 -5.55 16 9 C -0.14 -2.15 5.35 -91.73 -0.49 -2.64 16 10 H 0.13 1.84 7.74 -51.93 -0.40 1.44 16 11 C 0.53 10.21 7.59 -10.98 -0.08 10.12 16 12 O -0.54 -12.09 13.11 5.56 0.07 -12.01 16 13 N -0.70 -14.74 5.55 -61.47 -0.34 -15.08 16 14 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 15 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 16 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H 0.05 0.55 8.09 -51.93 -0.42 0.13 16 24 H 0.08 1.21 7.26 -51.93 -0.38 0.83 16 25 H 0.07 1.08 7.02 -51.93 -0.36 0.72 16 26 H 0.07 0.86 7.03 -51.93 -0.36 0.50 16 27 H 0.07 0.68 8.04 -51.93 -0.42 0.27 16 28 H 0.06 0.62 8.01 -51.93 -0.42 0.20 16 29 H 0.41 2.08 9.10 45.56 0.41 2.50 16 30 H 0.39 7.21 8.32 -40.82 -0.34 6.87 16 31 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 287.90 15.07 4.34 4.34 Total: -1.00 -32.09 287.90 -5.59 -37.68 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -3.48 Total: 6.08 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.07 Total: 1.47 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.40 Total: -40.24 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.74 Total: -25.11 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.09 -5.59 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.302 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds