Wall clock time and date at job start Mon Mar 30 2020 03:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 115.56190 * 2 1 4 4 C 1.52995 * 117.49895 * 145.69073 * 2 1 3 5 5 H 1.09001 * 117.50106 * 359.97438 * 4 2 1 6 6 C 1.50696 * 117.50098 * 214.97903 * 4 2 1 7 7 O 1.20835 * 119.99955 * 313.97392 * 6 4 2 8 8 O 1.34231 * 120.00153 * 133.97179 * 6 4 2 9 9 C 1.52998 * 60.03453 * 107.47852 * 4 2 1 10 10 H 1.08995 * 117.50057 * 107.50002 * 9 4 2 11 11 C 1.50703 * 117.49824 * 252.50200 * 9 4 2 12 12 O 1.21283 * 120.00158 * 68.60748 * 11 9 4 13 13 N 1.34777 * 119.99911 * 248.60104 * 11 9 4 14 14 C 1.46495 * 119.99959 * 179.97438 * 13 11 9 15 15 C 1.50705 * 109.47217 * 180.02562 * 14 13 11 16 16 H 1.07999 * 119.99658 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00060 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99875 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99677 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46789 * 90.00627 * 19 17 15 21 21 H 1.48498 * 109.46981 * 209.99666 * 19 17 15 22 22 H 1.48492 * 109.47719 * 330.00304 * 19 17 15 23 23 H 1.09002 * 109.47017 * 325.70505 * 1 2 3 24 24 H 1.09003 * 109.47235 * 85.69627 * 1 2 3 25 25 H 1.08992 * 109.47315 * 205.70054 * 1 2 3 26 26 H 1.08998 * 109.47101 * 211.16236 * 3 2 1 27 27 H 1.08993 * 109.46907 * 331.16088 * 3 2 1 28 28 H 1.08998 * 109.46725 * 91.16016 * 3 2 1 29 29 H 0.96702 * 116.99539 * 180.02562 * 8 6 4 30 30 H 0.97006 * 119.99877 * 0.02562 * 13 11 9 31 31 H 1.08997 * 109.47556 * 299.99996 * 14 13 11 32 32 H 1.08997 * 109.47190 * 60.00295 * 14 13 11 33 33 H 0.96998 * 119.99442 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1210 0.7649 5 1 1.6112 -1.8583 1.2686 6 6 3.5292 -0.7812 1.4608 7 8 4.3767 -0.1426 0.8828 8 8 3.7392 -1.1878 2.7226 9 6 2.2367 -1.1218 -0.7650 10 1 3.1718 -0.8766 -1.2683 11 6 1.3724 -2.1419 -1.4604 12 8 0.1642 -2.0548 -1.4009 13 7 1.9421 -3.1510 -2.1487 14 6 1.1020 -4.1429 -2.8242 15 6 1.9778 -5.1564 -3.5148 16 1 3.0528 -5.0704 -3.4560 17 6 1.4068 -6.1939 -4.2208 18 7 0.0978 -6.2995 -4.2912 19 14 2.4926 -7.4496 -5.0775 20 1 2.7815 -8.5706 -4.1473 21 1 1.7929 -7.9713 -6.2789 22 1 3.7662 -6.8055 -5.4871 23 1 -0.3633 0.8490 0.5791 24 1 -0.3634 0.0771 -1.0248 25 1 -0.3633 -0.9259 0.4456 26 1 3.1402 1.3286 -0.5318 27 1 1.5348 2.0964 -0.4957 28 1 2.3657 1.6990 1.0275 29 1 4.5835 -0.9454 3.1271 30 1 2.9085 -3.2209 -2.1961 31 1 0.4732 -4.6469 -2.0902 32 1 0.4722 -3.6444 -3.5610 33 1 -0.3038 -7.0292 -4.7882 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:46 Heat of formation + Delta-G solvation = -139.445841 kcal Electronic energy + Delta-G solvation = -17191.943359 eV Core-core repulsion = 14217.123519 eV Total energy + Delta-G solvation = -2974.819840 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.02730 -40.58461 -38.34944 -36.94003 -36.08504 -34.37184 -30.98877 -29.46366 -28.44313 -26.93596 -24.79782 -22.74507 -21.18296 -20.26963 -19.37498 -18.73120 -17.90534 -17.10596 -17.03759 -16.64403 -16.07368 -15.92594 -15.03386 -14.88785 -14.54514 -14.21427 -14.01683 -13.85968 -13.58940 -13.27671 -12.99122 -12.86374 -12.71496 -12.62564 -12.42299 -12.22353 -11.58816 -11.49980 -11.43992 -11.14655 -10.81048 -10.50470 -9.84371 -8.30307 -6.46594 0.82911 1.42791 1.44707 1.52718 1.56083 1.95057 2.31785 2.50609 2.67916 3.04808 3.41074 3.47762 3.73721 4.01287 4.03878 4.29411 4.56576 4.65644 4.77164 4.93440 5.02943 5.03959 5.10245 5.23826 5.25301 5.43103 5.52630 5.57327 5.67126 5.83770 6.63498 6.85386 6.98419 7.21760 7.41970 8.81740 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.031901 B = 0.005214 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.503239 B = 5368.655665 C = 5883.676272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.044 4.044 3 C -0.115 4.115 4 C -0.143 4.143 5 H 0.134 0.866 6 C 0.523 3.477 7 O -0.529 6.529 8 O -0.506 6.506 9 C -0.152 4.152 10 H 0.146 0.854 11 C 0.525 3.475 12 O -0.576 6.576 13 N -0.704 5.704 14 C 0.267 3.733 15 C -0.559 4.559 16 H 0.081 0.919 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.258 1.258 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.433 0.567 30 H 0.406 0.594 31 H -0.008 1.008 32 H -0.008 1.008 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 12.481 11.696 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.044 4.044 3 C -0.172 4.172 4 C -0.163 4.163 5 H 0.152 0.848 6 C 0.367 3.633 7 O -0.420 6.420 8 O -0.320 6.320 9 C -0.173 4.173 10 H 0.164 0.836 11 C 0.312 3.688 12 O -0.457 6.457 13 N -0.353 5.353 14 C 0.145 3.855 15 C -0.597 4.597 16 H 0.099 0.901 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.806 3.194 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.182 1.182 23 H 0.099 0.901 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.295 0.705 30 H 0.241 0.759 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.781 12.478 11.327 18.165 hybrid contribution 1.026 -0.986 -0.356 1.467 sum 7.807 11.491 10.971 17.702 Atomic orbital electron populations 1.21349 0.89912 1.02086 1.02461 1.21841 0.96009 0.90821 0.95765 1.21482 1.00711 0.91828 1.03143 1.21948 0.96268 1.06259 0.91791 0.84808 1.21849 0.86733 0.74832 0.79896 1.90706 1.46039 1.38478 1.66734 1.84465 1.46287 1.73422 1.27804 1.22537 1.02701 1.00162 0.91872 0.83625 1.20072 0.88050 0.81695 0.78990 1.90658 1.16017 1.75721 1.63297 1.46227 1.11109 1.26636 1.51293 1.18576 0.90504 0.85936 0.90500 1.21615 0.94053 1.10594 1.33393 0.90138 1.26018 0.96541 1.00064 0.96713 1.70124 1.11648 1.32898 1.42083 0.85180 0.78450 0.78120 0.77623 1.19587 1.20813 1.18164 0.90077 0.92394 0.93041 0.91403 0.89785 0.90987 0.70476 0.75892 0.99012 0.99021 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.70 8.03 71.98 0.58 -2.12 16 2 C -0.04 -1.08 2.70 -52.16 -0.14 -1.22 16 3 C -0.11 -2.26 8.42 71.98 0.61 -1.66 16 4 C -0.14 -3.60 5.65 -11.54 -0.07 -3.66 16 5 H 0.13 3.47 8.05 -2.39 -0.02 3.45 16 6 C 0.52 11.67 7.55 71.23 0.54 12.20 16 7 O -0.53 -13.53 15.38 21.94 0.34 -13.19 16 8 O -0.51 -8.41 13.42 -51.43 -0.69 -9.10 16 9 C -0.15 -4.42 5.35 -11.51 -0.06 -4.48 16 10 H 0.15 3.86 7.74 -2.39 -0.02 3.84 16 11 C 0.53 20.83 7.59 87.66 0.67 21.49 16 12 O -0.58 -26.69 13.11 -3.04 -0.04 -26.73 16 13 N -0.70 -30.10 5.55 -466.79 -2.59 -32.69 16 14 C 0.27 14.59 5.43 85.64 0.46 15.06 16 15 C -0.56 -30.50 9.28 25.60 0.24 -30.26 16 16 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 17 C 0.01 0.36 5.46 84.66 0.46 0.82 16 18 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 19 Si 0.98 42.37 29.54 68.60 2.03 44.40 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 23 H 0.08 1.63 8.09 -2.39 -0.02 1.61 16 24 H 0.06 1.79 7.26 -2.39 -0.02 1.78 16 25 H 0.05 1.57 7.02 -2.39 -0.02 1.55 16 26 H 0.07 1.44 7.03 -2.39 -0.02 1.42 16 27 H 0.08 1.41 8.04 -2.39 -0.02 1.39 16 28 H 0.07 1.26 8.01 -2.39 -0.02 1.24 16 29 H 0.43 2.91 9.10 -74.06 -0.67 2.24 16 30 H 0.41 14.86 8.32 -92.70 -0.77 14.09 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -70.59 287.90 2.31 -68.28 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -0.30 Total: 18.28 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 3.28 Total: 6.18 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -2.30 Total: -88.12 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -0.39 Total: -49.02 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -70.59 2.31 -68.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.162 kcal (2) G-P(sol) polarization free energy of solvation -70.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds