Wall clock time and date at job start Mon Mar 30 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 115.55111 * 2 1 4 4 C 1.53001 * 117.49870 * 145.67052 * 2 1 3 5 5 H 1.08996 * 117.49951 * 0.02562 * 4 2 1 6 6 C 1.50700 * 117.49759 * 214.99830 * 4 2 1 7 7 O 1.20825 * 120.00155 * 246.29410 * 6 4 2 8 8 O 1.34229 * 119.99633 * 66.30015 * 6 4 2 9 9 C 1.53001 * 117.49721 * 214.29618 * 2 1 3 10 10 H 1.09002 * 117.49974 * 359.97438 * 9 2 1 11 11 C 1.50693 * 117.50070 * 145.02215 * 9 2 1 12 12 O 1.21283 * 120.00193 * 359.97438 * 11 9 2 13 13 N 1.34781 * 120.00232 * 179.97438 * 11 9 2 14 14 C 1.46498 * 120.00068 * 180.02562 * 13 11 9 15 15 C 1.50699 * 109.46999 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00435 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99808 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47166 * 90.00316 * 19 17 15 21 21 H 1.48501 * 109.47065 * 210.00114 * 19 17 15 22 22 H 1.48499 * 109.47106 * 329.99996 * 19 17 15 23 23 H 1.09003 * 109.46947 * 325.72093 * 1 2 3 24 24 H 1.08999 * 109.47657 * 205.71944 * 1 2 3 25 25 H 1.09005 * 109.47520 * 85.71676 * 1 2 3 26 26 H 1.09001 * 109.47674 * 50.39193 * 3 2 1 27 27 H 1.09002 * 109.47383 * 170.39221 * 3 2 1 28 28 H 1.09008 * 109.47348 * 290.39200 * 3 2 1 29 29 H 0.96700 * 117.00003 * 179.97438 * 8 6 4 30 30 H 0.97000 * 119.99557 * 359.97438 * 13 11 9 31 31 H 1.09005 * 109.46772 * 299.99434 * 14 13 11 32 32 H 1.08994 * 109.47723 * 59.99496 * 14 13 11 33 33 H 0.96998 * 119.99876 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1207 0.7654 5 1 1.6112 -1.8583 1.2685 6 6 3.5290 -0.7805 1.4614 7 8 4.5658 -1.2740 1.0854 8 8 3.5284 0.0707 2.4993 9 6 2.2364 -1.1212 -0.7647 10 1 1.6111 -1.8591 -1.2675 11 6 3.5291 -0.7816 -1.4606 12 8 3.9715 0.3461 -1.4017 13 7 4.1939 -1.7311 -2.1485 14 6 5.4509 -1.4011 -2.8246 15 6 5.9868 -2.6283 -3.5157 16 1 5.4455 -3.5610 -3.4569 17 6 7.1684 -2.5605 -4.2232 18 7 7.8279 -1.4250 -4.2944 19 14 7.8331 -4.0820 -5.0792 20 1 7.2972 -4.1454 -6.4627 21 1 9.3159 -4.0160 -5.1253 22 1 7.4145 -5.2940 -4.3302 23 1 -0.3633 0.8492 0.5788 24 1 -0.3634 -0.9258 0.4460 25 1 -0.3634 0.0768 -1.0248 26 1 1.7555 1.9908 0.7917 27 1 3.2607 1.2712 0.1715 28 1 2.0235 1.8627 -0.9633 29 1 4.3817 0.2580 2.9139 30 1 3.8402 -2.6331 -2.1953 31 1 5.2723 -0.6182 -3.5618 32 1 6.1769 -1.0505 -2.0910 33 1 8.6589 -1.3772 -4.7924 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082923737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:48 Heat of formation + Delta-G solvation = -109.714425 kcal Electronic energy + Delta-G solvation = -17630.561711 eV Core-core repulsion = 14657.031122 eV Total energy + Delta-G solvation = -2973.530589 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80390 -38.90829 -36.87006 -35.88256 -34.08548 -32.27517 -29.76226 -27.57231 -27.34235 -25.40861 -22.99218 -21.24198 -19.70624 -19.11692 -17.73052 -17.22920 -16.25917 -15.81124 -15.25639 -15.02324 -14.28378 -14.17870 -13.87309 -13.46206 -13.33705 -12.83764 -12.65849 -12.15936 -12.02206 -11.83498 -11.66686 -11.35743 -11.33063 -10.91866 -10.85421 -10.49891 -10.24770 -10.20256 -9.79996 -9.33147 -8.79327 -8.67292 -7.78420 -6.11152 -4.17266 2.35293 2.79763 3.23872 3.27681 3.33430 3.36522 3.76410 4.01960 4.38361 4.58713 4.73915 4.90972 5.02355 5.25014 5.38196 5.48762 5.55046 5.58768 5.80338 5.87069 5.98127 6.08055 6.22259 6.63049 6.71515 7.37903 7.52994 7.61244 7.72894 8.03594 8.06784 8.70435 8.83907 9.17305 9.48769 10.99303 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.036045 B = 0.005739 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.617254 B = 4877.353034 C = 5082.476811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.114 4.114 4 C -0.137 4.137 5 H 0.146 0.854 6 C 0.505 3.495 7 O -0.487 6.487 8 O -0.514 6.514 9 C -0.154 4.154 10 H 0.132 0.868 11 C 0.530 3.470 12 O -0.550 6.550 13 N -0.698 5.698 14 C 0.253 3.747 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.408 0.592 30 H 0.390 0.610 31 H 0.026 0.974 32 H 0.028 0.972 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 0.965 10.819 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.070 4.070 3 C -0.171 4.171 4 C -0.157 4.157 5 H 0.163 0.837 6 C 0.345 3.655 7 O -0.372 6.372 8 O -0.326 6.326 9 C -0.175 4.175 10 H 0.150 0.850 11 C 0.314 3.686 12 O -0.430 6.430 13 N -0.345 5.345 14 C 0.132 3.868 15 C -0.579 4.579 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.267 0.733 30 H 0.222 0.778 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.040 1.620 10.450 17.577 hybrid contribution 0.876 -1.343 -0.253 1.624 sum -13.164 0.276 10.197 16.653 Atomic orbital electron populations 1.21413 0.90886 1.02406 1.02611 1.21698 0.94962 0.91815 0.98548 1.21537 1.01932 0.92072 1.01538 1.21967 0.95773 1.05036 0.92892 0.83689 1.22150 0.90195 0.75546 0.77572 1.90852 1.33598 1.50026 1.62736 1.84491 1.41481 1.60926 1.45737 1.22746 0.99483 1.03679 0.91605 0.85010 1.19244 0.84159 0.85636 0.79528 1.90616 1.68951 1.21071 1.62380 1.46309 1.25604 1.11771 1.50776 1.19085 0.79310 0.96578 0.91833 1.21237 1.07779 0.95872 1.33003 0.91942 1.24949 0.96375 0.96502 0.96222 1.69980 1.16327 1.25081 1.41041 0.86414 0.78121 0.82631 0.79729 1.20487 1.21026 1.19755 0.91383 0.92077 0.91392 0.92992 0.89968 0.91529 0.73332 0.77805 0.95626 0.95440 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.85 37.16 0.37 -0.66 16 2 C -0.07 -0.88 2.70 -154.51 -0.42 -1.30 16 3 C -0.11 -1.67 7.68 37.16 0.29 -1.39 16 4 C -0.14 -1.80 5.90 -91.77 -0.54 -2.34 16 5 H 0.15 1.38 8.05 -51.93 -0.42 0.96 16 6 C 0.50 8.00 5.73 36.01 0.21 8.20 16 7 O -0.49 -9.95 16.43 -18.75 -0.31 -10.26 16 8 O -0.51 -6.40 13.17 -39.25 -0.52 -6.92 16 9 C -0.15 -2.28 5.91 -91.77 -0.54 -2.82 16 10 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 11 C 0.53 11.07 5.69 -10.99 -0.06 11.01 16 12 O -0.55 -13.24 12.95 5.56 0.07 -13.17 16 13 N -0.70 -15.71 5.55 -61.47 -0.34 -16.05 16 14 C 0.25 7.03 5.43 -5.19 -0.03 7.00 16 15 C -0.54 -15.27 9.28 -34.44 -0.32 -15.59 16 16 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 17 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 23 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 24 H 0.06 0.44 7.90 -51.93 -0.41 0.02 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.49 4.68 -51.93 -0.24 1.24 16 28 H 0.07 1.02 8.07 -51.92 -0.42 0.60 16 29 H 0.41 3.57 9.10 45.56 0.41 3.98 16 30 H 0.39 7.64 8.32 -40.82 -0.34 7.30 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 286.70 15.07 4.32 4.32 Total: -1.00 -35.68 286.70 -5.69 -41.38 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -3.48 Total: 6.63 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -1.15 Total: 3.81 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.40 Total: -42.22 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.75 Total: -30.35 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.68 -5.69 -41.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.339 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds