Wall clock time and date at job start Mon Mar 30 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 115.55111 * 2 1 4 4 C 1.53001 * 117.49870 * 145.67052 * 2 1 3 5 5 H 1.08996 * 117.49951 * 0.02562 * 4 2 1 6 6 C 1.50700 * 117.49759 * 214.99830 * 4 2 1 7 7 O 1.20825 * 120.00155 * 246.29410 * 6 4 2 8 8 O 1.34229 * 119.99633 * 66.30015 * 6 4 2 9 9 C 1.53001 * 117.49721 * 214.29618 * 2 1 3 10 10 H 1.09002 * 117.49974 * 359.97438 * 9 2 1 11 11 C 1.50693 * 117.50070 * 145.02215 * 9 2 1 12 12 O 1.21283 * 120.00193 * 359.97438 * 11 9 2 13 13 N 1.34781 * 120.00232 * 179.97438 * 11 9 2 14 14 C 1.46498 * 120.00068 * 180.02562 * 13 11 9 15 15 C 1.50699 * 109.46999 * 180.02562 * 14 13 11 16 16 H 1.08002 * 120.00435 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99808 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47166 * 90.00316 * 19 17 15 21 21 H 1.48501 * 109.47065 * 210.00114 * 19 17 15 22 22 H 1.48499 * 109.47106 * 329.99996 * 19 17 15 23 23 H 1.09003 * 109.46947 * 325.72093 * 1 2 3 24 24 H 1.08999 * 109.47657 * 205.71944 * 1 2 3 25 25 H 1.09005 * 109.47520 * 85.71676 * 1 2 3 26 26 H 1.09001 * 109.47674 * 50.39193 * 3 2 1 27 27 H 1.09002 * 109.47383 * 170.39221 * 3 2 1 28 28 H 1.09008 * 109.47348 * 290.39200 * 3 2 1 29 29 H 0.96700 * 117.00003 * 179.97438 * 8 6 4 30 30 H 0.97000 * 119.99557 * 359.97438 * 13 11 9 31 31 H 1.09005 * 109.46772 * 299.99434 * 14 13 11 32 32 H 1.08994 * 109.47723 * 59.99496 * 14 13 11 33 33 H 0.96998 * 119.99876 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2364 -1.1207 0.7654 5 1 1.6112 -1.8583 1.2685 6 6 3.5290 -0.7805 1.4614 7 8 4.5658 -1.2740 1.0854 8 8 3.5284 0.0707 2.4993 9 6 2.2364 -1.1212 -0.7647 10 1 1.6111 -1.8591 -1.2675 11 6 3.5291 -0.7816 -1.4606 12 8 3.9715 0.3461 -1.4017 13 7 4.1939 -1.7311 -2.1485 14 6 5.4509 -1.4011 -2.8246 15 6 5.9868 -2.6283 -3.5157 16 1 5.4455 -3.5610 -3.4569 17 6 7.1684 -2.5605 -4.2232 18 7 7.8279 -1.4250 -4.2944 19 14 7.8331 -4.0820 -5.0792 20 1 7.2972 -4.1454 -6.4627 21 1 9.3159 -4.0160 -5.1253 22 1 7.4145 -5.2940 -4.3302 23 1 -0.3633 0.8492 0.5788 24 1 -0.3634 -0.9258 0.4460 25 1 -0.3634 0.0768 -1.0248 26 1 1.7555 1.9908 0.7917 27 1 3.2607 1.2712 0.1715 28 1 2.0235 1.8627 -0.9633 29 1 4.3817 0.2580 2.9139 30 1 3.8402 -2.6331 -2.1953 31 1 5.2723 -0.6182 -3.5618 32 1 6.1769 -1.0505 -2.0910 33 1 8.6589 -1.3772 -4.7924 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082923737.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:48 Heat of formation + Delta-G solvation = -137.932155 kcal Electronic energy + Delta-G solvation = -17631.785324 eV Core-core repulsion = 14657.031122 eV Total energy + Delta-G solvation = -2974.754202 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07341 -40.35726 -38.24531 -37.11059 -36.08786 -34.36762 -30.87692 -29.42219 -28.40205 -26.83224 -24.84136 -22.82601 -21.12255 -20.44542 -18.93860 -18.82976 -17.95494 -17.11330 -16.98865 -16.72870 -15.91776 -15.85003 -15.25189 -14.65255 -14.46466 -14.23003 -14.02122 -13.89355 -13.67626 -13.21653 -12.98599 -12.79821 -12.73022 -12.58344 -12.32257 -12.19544 -11.76437 -11.51550 -11.30705 -10.90680 -10.81422 -10.42903 -9.79935 -8.31425 -6.48486 1.12398 1.40088 1.43751 1.50446 1.55046 2.03026 2.30957 2.51219 2.64587 3.03105 3.46317 3.58003 3.78579 4.10191 4.18190 4.42328 4.63783 4.67234 4.86174 4.98351 5.07549 5.09209 5.12667 5.21737 5.35950 5.45788 5.54352 5.58488 5.71181 5.83824 6.62594 6.91214 6.94272 7.20920 7.50828 8.81300 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.036045 B = 0.005739 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.617254 B = 4877.353034 C = 5082.476811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.055 4.055 3 C -0.116 4.116 4 C -0.128 4.128 5 H 0.196 0.804 6 C 0.501 3.499 7 O -0.546 6.546 8 O -0.502 6.502 9 C -0.169 4.169 10 H 0.174 0.826 11 C 0.521 3.479 12 O -0.591 6.591 13 N -0.700 5.700 14 C 0.273 3.727 15 C -0.557 4.557 16 H 0.083 0.917 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.989 3.011 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.257 1.257 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.423 0.577 30 H 0.405 0.595 31 H -0.012 1.012 32 H -0.024 1.024 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.229 -1.073 11.471 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.056 4.056 3 C -0.172 4.172 4 C -0.146 4.146 5 H 0.213 0.787 6 C 0.345 3.655 7 O -0.436 6.436 8 O -0.315 6.315 9 C -0.189 4.189 10 H 0.191 0.809 11 C 0.309 3.691 12 O -0.473 6.473 13 N -0.348 5.348 14 C 0.151 3.849 15 C -0.595 4.595 16 H 0.101 0.899 17 C -0.198 4.198 18 N -0.571 5.571 19 Si 0.811 3.189 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.180 1.180 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.284 0.716 30 H 0.240 0.760 31 H 0.006 0.994 32 H -0.006 1.006 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.830 -0.413 11.148 20.192 hybrid contribution 1.745 -0.540 -0.356 1.861 sum -15.085 -0.953 10.791 18.572 Atomic orbital electron populations 1.21469 0.86894 1.04613 1.03648 1.21883 0.97375 0.89815 0.96499 1.21474 0.99826 0.94282 1.01665 1.22318 0.94744 1.06228 0.91334 0.78706 1.22850 0.90589 0.74648 0.77441 1.90843 1.35868 1.52436 1.64485 1.84453 1.42636 1.59670 1.44747 1.22760 0.96739 1.06731 0.92687 0.80912 1.20368 0.85763 0.84530 0.78448 1.90607 1.70584 1.22838 1.63317 1.46084 1.24266 1.13192 1.51307 1.18437 0.80781 0.95872 0.89854 1.21626 1.08432 0.96356 1.33069 0.89928 1.26132 0.96533 1.00299 0.96801 1.70152 1.16939 1.28041 1.42013 0.85104 0.77087 0.78002 0.78691 1.19124 1.20853 1.18041 0.90087 0.89150 0.90804 0.90331 0.94028 0.92984 0.71640 0.75971 0.99443 1.00600 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.85 71.98 0.71 -0.67 16 2 C -0.05 -1.24 2.70 -52.18 -0.14 -1.38 16 3 C -0.12 -3.32 7.68 71.98 0.55 -2.77 16 4 C -0.13 -2.95 5.90 -11.54 -0.07 -3.02 16 5 H 0.20 2.57 8.05 -2.39 -0.02 2.55 16 6 C 0.50 15.57 5.73 71.24 0.41 15.98 16 7 O -0.55 -23.06 16.43 21.97 0.36 -22.70 16 8 O -0.50 -11.97 13.17 -51.41 -0.68 -12.65 16 9 C -0.17 -4.63 5.91 -11.54 -0.07 -4.69 16 10 H 0.17 3.28 8.14 -2.39 -0.02 3.26 16 11 C 0.52 22.35 5.69 87.65 0.50 22.85 16 12 O -0.59 -30.21 12.95 -3.04 -0.04 -30.25 16 13 N -0.70 -32.58 5.55 -466.79 -2.59 -35.17 16 14 C 0.27 16.19 5.43 85.63 0.46 16.65 16 15 C -0.56 -32.19 9.28 25.60 0.24 -31.96 16 16 H 0.08 4.33 7.60 -2.91 -0.02 4.30 16 17 C 0.00 0.09 5.46 84.66 0.46 0.55 16 18 N -0.93 -58.74 13.29 21.45 0.28 -58.46 16 19 Si 0.99 44.03 29.54 68.60 2.03 46.05 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 23 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 24 H 0.09 0.68 7.90 -2.39 -0.02 0.66 16 25 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.04 1.54 4.68 -2.39 -0.01 1.53 16 28 H 0.05 1.61 8.07 -2.38 -0.02 1.59 16 29 H 0.42 7.28 9.10 -74.06 -0.67 6.61 16 30 H 0.41 15.89 8.32 -92.71 -0.77 15.11 16 31 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 32 H -0.02 -1.63 8.14 -2.39 -0.02 -1.65 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -84.44 286.70 2.12 -82.32 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.30 Total: 19.31 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 3.06 Total: 11.55 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -2.30 Total: -93.63 kcal Atomic # 8 Polarization: -65.25 SS G_CDS: -0.36 Total: -65.61 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -84.44 2.12 -82.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082923737.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.608 kcal (2) G-P(sol) polarization free energy of solvation -84.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds