Wall clock time and date at job start Mon Mar 30 2020 03:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48504 * 109.47186 * 270.00056 * 3 2 1 5 5 H 1.48503 * 109.47274 * 29.99781 * 3 2 1 6 6 H 1.48495 * 109.47231 * 149.99772 * 3 2 1 7 7 C 1.40346 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.39916 * 119.99618 * 0.02562 * 7 2 1 10 10 N 1.32855 * 126.46431 * 0.02562 * 9 7 2 11 11 N 1.28680 * 109.00328 * 179.97438 * 10 9 7 12 12 C 1.31134 * 109.58905 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.05685 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47571 * 194.97513 * 13 12 11 15 15 N 1.46912 * 109.46876 * 314.97486 * 13 12 11 16 16 C 1.52999 * 109.47166 * 74.96935 * 13 12 11 17 17 C 1.53001 * 109.46896 * 175.00148 * 16 13 12 18 18 C 1.50700 * 109.46808 * 180.02562 * 17 16 13 19 19 O 1.20828 * 120.00326 * 0.02562 * 18 17 16 20 20 O 1.34232 * 119.99982 * 179.97438 * 18 17 16 21 21 O 1.34298 * 107.88583 * 359.97438 * 12 11 10 22 22 H 0.97005 * 119.99880 * 0.02562 * 1 2 3 23 23 H 1.00900 * 110.99867 * 59.99837 * 15 13 12 24 24 H 1.00901 * 110.99190 * 183.95459 * 15 13 12 25 25 H 1.08995 * 109.47437 * 295.00149 * 16 13 12 26 26 H 1.09004 * 109.46725 * 55.00709 * 16 13 12 27 27 H 1.09004 * 109.47277 * 300.00135 * 17 16 13 28 28 H 1.08994 * 109.47529 * 60.00781 * 17 16 13 29 29 H 0.96696 * 117.00026 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4877 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5377 1.4402 0.7001 7 6 2.0080 -1.2154 0.0005 8 1 3.0880 -1.2154 0.0010 9 6 1.3084 -2.4271 0.0005 10 7 -0.0117 -2.5767 -0.0004 11 7 -0.2911 -3.8328 -0.0006 12 6 0.8194 -4.5302 -0.0004 13 6 0.9227 -6.0336 -0.0010 14 1 1.9378 -6.3283 0.2649 15 7 -0.0210 -6.5896 0.9781 16 6 0.5851 -6.5674 -1.3946 17 6 0.8103 -8.0803 -1.4295 18 6 0.4784 -8.6060 -2.8023 19 8 0.1010 -7.8482 -3.6645 20 8 0.6030 -9.9159 -3.0676 21 8 1.8485 -3.6672 -0.0006 22 1 -0.4850 0.8401 -0.0004 23 1 -0.9698 -6.3304 0.7533 24 1 0.0743 -7.5920 1.0431 25 1 -0.4579 -6.3499 -1.6242 26 1 1.2275 -6.0874 -2.1329 27 1 1.8534 -8.2979 -1.1999 28 1 0.1680 -8.5604 -0.6913 29 1 0.3789 -10.2058 -3.9624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083346093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:11 Heat of formation + Delta-G solvation = -78.018177 kcal Electronic energy + Delta-G solvation = -16708.667019 eV Core-core repulsion = 13632.970539 eV Total energy + Delta-G solvation = -3075.696480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.67825 -40.37616 -36.79468 -36.03993 -34.06402 -33.70415 -31.42093 -29.55616 -27.22556 -25.46470 -23.03007 -21.54985 -20.86381 -19.90432 -18.21690 -17.65847 -16.90712 -16.35959 -15.91339 -15.42633 -15.26940 -14.50500 -14.17703 -13.62709 -13.59078 -13.30977 -12.65637 -12.37620 -11.77402 -11.68088 -11.51084 -11.39277 -11.07753 -10.88898 -10.70753 -10.53737 -10.33133 -9.77331 -9.64071 -8.69027 -8.54497 -7.87992 -6.84694 -4.86863 2.07529 2.75679 2.88529 2.99336 3.04765 3.22393 3.73352 4.12762 4.23575 4.70562 4.85534 4.98037 5.07314 5.14570 5.42535 5.46005 5.49315 5.89680 6.04192 6.27234 6.39904 6.74769 7.02696 7.28932 7.39386 7.54163 7.70021 7.74088 8.05551 8.28559 8.53576 10.07932 10.56008 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.046691 B = 0.004746 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.546123 B = 5898.783876 C = 6100.335157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.072 3.928 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.424 4.424 8 H 0.096 0.904 9 C 0.291 3.709 10 N -0.360 5.360 11 N -0.264 5.264 12 C 0.015 3.985 13 C 0.222 3.778 14 H 0.092 0.908 15 N -0.834 5.834 16 C -0.140 4.140 17 C -0.113 4.113 18 C 0.476 3.524 19 O -0.509 6.509 20 O -0.521 6.521 21 O -0.272 6.272 22 H 0.285 0.715 23 H 0.353 0.647 24 H 0.338 0.662 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -12.955 -2.452 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.155 4.155 3 Si 0.757 3.243 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.460 4.460 8 H 0.114 0.886 9 C 0.107 3.893 10 N -0.214 5.214 11 N -0.115 5.115 12 C -0.196 4.196 13 C 0.109 3.891 14 H 0.110 0.890 15 N -0.366 5.366 16 C -0.181 4.181 17 C -0.151 4.151 18 C 0.319 3.681 19 O -0.396 6.396 20 O -0.334 6.334 21 O -0.160 6.160 22 H 0.096 0.904 23 H 0.168 0.832 24 H 0.151 0.849 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.128 0.872 28 H 0.122 0.878 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 1.716 -11.738 -1.738 11.990 hybrid contribution 1.082 -0.262 -1.466 1.841 sum 2.798 -12.000 -3.204 12.732 Atomic orbital electron populations 1.69937 1.07330 1.29481 1.27880 1.25955 0.95124 1.01132 0.93271 0.85895 0.79991 0.78976 0.79479 1.19035 1.19684 1.18230 1.18229 0.94744 0.85635 1.47379 0.88632 1.23774 0.89064 0.83016 0.93455 1.75727 1.10097 1.04237 1.31381 1.74011 1.25389 1.00570 1.11563 1.25871 0.82776 0.93636 1.17356 1.18879 0.97445 0.84194 0.88631 0.89007 1.58638 1.10361 1.15320 1.52313 1.22330 1.04695 0.91512 0.99559 1.21429 1.05054 0.97512 0.91068 1.23582 0.73585 0.79545 0.91431 1.90771 1.42420 1.57945 1.48483 1.84540 1.81709 1.27419 1.39703 1.84659 1.37901 1.17331 1.76145 0.90378 0.83225 0.84850 0.90025 0.90115 0.87248 0.87768 0.73331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -19.72 11.93 55.57 0.66 -19.06 15 2 C 0.07 1.83 5.50 -17.27 -0.10 1.74 15 3 Si 0.93 18.36 29.56 -169.99 -5.03 13.33 15 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 5 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 7 C -0.42 -11.64 9.46 -38.16 -0.36 -12.00 15 8 H 0.10 2.40 7.85 -52.49 -0.41 1.99 15 9 C 0.29 8.58 7.85 -16.48 -0.13 8.45 15 10 N -0.36 -10.99 10.52 30.64 0.32 -10.67 15 11 N -0.26 -7.24 12.11 32.68 0.40 -6.85 15 12 C 0.02 0.36 7.30 -12.58 -0.09 0.27 15 13 C 0.22 3.74 3.35 -68.86 -0.23 3.51 15 14 H 0.09 1.40 8.14 -51.93 -0.42 0.97 15 15 N -0.83 -12.29 9.17 -5.65 -0.05 -12.35 15 16 C -0.14 -2.08 4.13 -26.73 -0.11 -2.19 15 17 C -0.11 -1.14 5.58 -27.88 -0.16 -1.29 15 18 C 0.48 5.51 8.33 36.01 0.30 5.81 15 19 O -0.51 -8.02 16.74 -18.75 -0.31 -8.34 15 20 O -0.52 -4.44 13.42 -39.26 -0.53 -4.96 15 21 O -0.27 -7.39 10.90 3.02 0.03 -7.35 15 22 H 0.29 6.90 8.29 -40.82 -0.34 6.57 15 23 H 0.35 5.47 8.87 -39.29 -0.35 5.12 15 24 H 0.34 3.50 7.55 -39.29 -0.30 3.20 15 25 H 0.08 1.35 8.10 -51.93 -0.42 0.93 15 26 H 0.08 1.35 8.10 -51.93 -0.42 0.93 15 27 H 0.11 0.88 8.14 -51.93 -0.42 0.46 15 28 H 0.10 0.80 6.87 -51.93 -0.36 0.44 15 29 H 0.41 1.87 9.10 45.56 0.41 2.29 15 LS Contribution 268.20 15.07 4.04 4.04 Total: -1.00 -35.85 268.20 -3.16 -39.00 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -1.82 Total: 8.89 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.87 Total: 4.31 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 1.33 Total: -48.92 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.81 Total: -20.65 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -35.85 -3.16 -39.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083346093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.017 kcal (2) G-P(sol) polarization free energy of solvation -35.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds