Wall clock time and date at job start Mon Mar 30 2020 03:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48504 * 109.47186 * 270.00056 * 3 2 1 5 5 H 1.48503 * 109.47274 * 29.99781 * 3 2 1 6 6 H 1.48495 * 109.47231 * 149.99772 * 3 2 1 7 7 C 1.40346 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00101 * 180.02562 * 7 2 1 9 9 C 1.39916 * 119.99618 * 0.02562 * 7 2 1 10 10 N 1.32855 * 126.46431 * 0.02562 * 9 7 2 11 11 N 1.28680 * 109.00328 * 179.97438 * 10 9 7 12 12 C 1.31134 * 109.58905 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.05685 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.47571 * 194.97513 * 13 12 11 15 15 N 1.46912 * 109.46876 * 314.97486 * 13 12 11 16 16 C 1.52999 * 109.47166 * 74.96935 * 13 12 11 17 17 C 1.53001 * 109.46896 * 175.00148 * 16 13 12 18 18 C 1.50700 * 109.46808 * 180.02562 * 17 16 13 19 19 O 1.20828 * 120.00326 * 0.02562 * 18 17 16 20 20 O 1.34232 * 119.99982 * 179.97438 * 18 17 16 21 21 O 1.34298 * 107.88583 * 359.97438 * 12 11 10 22 22 H 0.97005 * 119.99880 * 0.02562 * 1 2 3 23 23 H 1.00900 * 110.99867 * 59.99837 * 15 13 12 24 24 H 1.00901 * 110.99190 * 183.95459 * 15 13 12 25 25 H 1.08995 * 109.47437 * 295.00149 * 16 13 12 26 26 H 1.09004 * 109.46725 * 55.00709 * 16 13 12 27 27 H 1.09004 * 109.47277 * 300.00135 * 17 16 13 28 28 H 1.08994 * 109.47529 * 60.00781 * 17 16 13 29 29 H 0.96696 * 117.00026 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4877 2.0464 -1.4001 5 1 1.4377 2.6527 0.7000 6 1 3.5377 1.4402 0.7001 7 6 2.0080 -1.2154 0.0005 8 1 3.0880 -1.2154 0.0010 9 6 1.3084 -2.4271 0.0005 10 7 -0.0117 -2.5767 -0.0004 11 7 -0.2911 -3.8328 -0.0006 12 6 0.8194 -4.5302 -0.0004 13 6 0.9227 -6.0336 -0.0010 14 1 1.9378 -6.3283 0.2649 15 7 -0.0210 -6.5896 0.9781 16 6 0.5851 -6.5674 -1.3946 17 6 0.8103 -8.0803 -1.4295 18 6 0.4784 -8.6060 -2.8023 19 8 0.1010 -7.8482 -3.6645 20 8 0.6030 -9.9159 -3.0676 21 8 1.8485 -3.6672 -0.0006 22 1 -0.4850 0.8401 -0.0004 23 1 -0.9698 -6.3304 0.7533 24 1 0.0743 -7.5920 1.0431 25 1 -0.4579 -6.3499 -1.6242 26 1 1.2275 -6.0874 -2.1329 27 1 1.8534 -8.2979 -1.1999 28 1 0.1680 -8.5604 -0.6913 29 1 0.3789 -10.2058 -3.9624 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083346093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:11 Heat of formation + Delta-G solvation = -112.251603 kcal Electronic energy + Delta-G solvation = -16710.151492 eV Core-core repulsion = 13632.970539 eV Total energy + Delta-G solvation = -3077.180953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 241.089 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.74796 -41.29564 -37.95740 -37.03145 -36.11604 -35.72276 -32.55640 -31.47577 -28.81421 -27.11980 -24.51208 -23.60161 -22.12660 -21.39773 -19.67611 -19.08446 -18.13461 -17.50093 -17.31292 -17.25763 -16.94706 -15.96298 -15.76252 -15.12293 -14.84093 -14.66577 -13.89907 -13.57297 -13.43753 -13.12484 -13.03064 -12.62985 -12.54046 -12.45694 -12.12194 -12.03199 -11.86688 -11.68893 -11.46011 -10.76539 -10.05275 -9.68750 -8.76875 -6.97211 0.95083 1.19526 1.37797 1.54096 1.58789 1.98773 2.11671 2.25939 2.43565 3.07307 3.56292 3.75489 3.90804 3.95981 4.05601 4.26877 4.52564 4.65571 4.70807 4.83378 5.05133 5.09813 5.35773 5.61574 5.62853 6.00085 6.08105 6.21423 6.49477 6.67293 6.98067 8.19767 8.46773 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.046691 B = 0.004746 C = 0.004589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.546123 B = 5898.783876 C = 6100.335157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.024 3.976 3 Si 1.024 2.976 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.246 1.246 7 C -0.450 4.450 8 H 0.111 0.889 9 C 0.258 3.742 10 N -0.409 5.409 11 N -0.301 5.301 12 C 0.037 3.963 13 C 0.225 3.775 14 H 0.120 0.880 15 N -0.835 5.835 16 C -0.129 4.129 17 C -0.103 4.103 18 C 0.484 3.516 19 O -0.562 6.562 20 O -0.508 6.508 21 O -0.284 6.284 22 H 0.295 0.705 23 H 0.349 0.651 24 H 0.367 0.633 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.142 0.858 28 H 0.138 0.862 29 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -14.049 -1.984 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.198 4.198 3 Si 0.840 3.160 4 H -0.180 1.180 5 H -0.185 1.185 6 H -0.169 1.169 7 C -0.485 4.485 8 H 0.129 0.871 9 C 0.073 3.927 10 N -0.263 5.263 11 N -0.149 5.149 12 C -0.177 4.177 13 C 0.112 3.888 14 H 0.138 0.862 15 N -0.371 5.371 16 C -0.170 4.170 17 C -0.140 4.140 18 C 0.328 3.672 19 O -0.453 6.453 20 O -0.322 6.322 21 O -0.172 6.172 22 H 0.106 0.894 23 H 0.163 0.837 24 H 0.185 0.815 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 3.221 -12.920 -1.267 13.376 hybrid contribution 0.586 -0.126 -1.624 1.731 sum 3.807 -13.046 -2.890 13.894 Atomic orbital electron populations 1.70040 1.09615 1.31389 1.28260 1.27288 0.95975 1.04973 0.91579 0.84614 0.78586 0.72748 0.80070 1.17958 1.18509 1.16858 1.18874 0.95781 0.86050 1.47811 0.87068 1.24355 0.89377 0.84217 0.94761 1.75621 1.10993 1.05795 1.33896 1.73891 1.26746 1.00127 1.14135 1.27479 0.81497 0.96260 1.12498 1.19187 0.99546 0.79581 0.90493 0.86242 1.58524 1.09618 1.17603 1.51319 1.22082 1.02529 0.95155 0.97230 1.21377 1.07824 0.93617 0.91215 1.23758 0.72201 0.79953 0.91284 1.90773 1.45037 1.59362 1.50130 1.84488 1.80927 1.25470 1.41290 1.84663 1.38812 1.17327 1.76411 0.89375 0.83695 0.81486 0.92448 0.92635 0.83997 0.84465 0.71176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.10 11.93 21.90 0.26 -42.84 15 2 C 0.02 1.23 5.50 85.39 0.47 1.70 15 3 Si 1.02 37.02 29.56 68.60 2.03 39.05 15 4 H -0.26 -8.78 7.11 99.48 0.71 -8.07 15 5 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 6 H -0.25 -8.30 7.11 99.48 0.71 -7.59 15 7 C -0.45 -25.19 9.46 23.19 0.22 -24.97 15 8 H 0.11 5.62 7.85 -2.91 -0.02 5.59 15 9 C 0.26 15.74 7.85 84.94 0.67 16.41 15 10 N -0.41 -26.14 10.52 -169.75 -1.79 -27.93 15 11 N -0.30 -17.15 12.11 -164.71 -1.99 -19.14 15 12 C 0.04 1.81 7.30 88.21 0.64 2.45 15 13 C 0.23 7.27 3.35 44.17 0.15 7.42 15 14 H 0.12 3.26 8.14 -2.39 -0.02 3.24 15 15 N -0.84 -22.84 9.17 -171.78 -1.58 -24.42 15 16 C -0.13 -3.70 4.13 30.59 0.13 -3.58 15 17 C -0.10 -1.74 5.58 29.85 0.17 -1.57 15 18 C 0.48 10.15 8.33 71.24 0.59 10.75 15 19 O -0.56 -17.57 16.74 21.96 0.37 -17.20 15 20 O -0.51 -7.05 13.42 -51.43 -0.69 -7.74 15 21 O -0.28 -15.74 10.90 -12.10 -0.13 -15.87 15 22 H 0.30 14.60 8.29 -92.70 -0.77 13.83 15 23 H 0.35 10.45 8.87 -89.69 -0.80 9.65 15 24 H 0.37 6.21 7.55 -89.69 -0.68 5.53 15 25 H 0.06 1.92 8.10 -2.39 -0.02 1.90 15 26 H 0.05 1.87 8.10 -2.39 -0.02 1.85 15 27 H 0.14 1.59 8.14 -2.39 -0.02 1.57 15 28 H 0.14 1.46 6.87 -2.39 -0.02 1.45 15 29 H 0.43 2.76 9.10 -74.06 -0.67 2.09 15 Total: -1.00 -83.22 268.20 -1.40 -84.62 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.91 Total: 22.85 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 3.03 Total: 8.61 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -5.10 Total: -114.32 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.45 Total: -40.81 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Total: -83.22 -1.40 -84.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083346093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.635 kcal (2) G-P(sol) polarization free energy of solvation -83.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds