Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.46922 * 54.99919 * 3 2 1 5 5 C 1.53006 * 109.47164 * 174.99670 * 3 2 1 6 6 S 1.81391 * 109.47153 * 294.99854 * 3 2 1 7 7 C 1.81402 * 103.00320 * 175.00383 * 6 3 2 8 8 C 1.50698 * 109.47258 * 180.02562 * 7 6 3 9 9 N 1.31399 * 125.15597 * 269.68846 * 8 7 6 10 10 N 1.40454 * 107.17493 * 179.91288 * 9 8 7 11 11 H 0.97008 * 127.01044 * 180.11732 * 10 9 8 12 12 C 1.37017 * 105.97449 * 0.34832 * 10 9 8 13 13 C 1.40371 * 126.32095 * 179.77173 * 12 10 9 14 14 H 1.08002 * 119.99679 * 359.97438 * 13 12 10 15 15 C 1.40267 * 120.00320 * 179.97438 * 13 12 10 16 16 N 1.30651 * 119.99605 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00104 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47232 * 89.99810 * 17 15 13 19 19 H 1.48499 * 109.47090 * 210.00011 * 17 15 13 20 20 H 1.48506 * 109.46900 * 329.99964 * 17 15 13 21 21 N 1.32227 * 125.15693 * 89.99899 * 8 7 6 22 22 H 1.09000 * 109.46966 * 300.00238 * 1 2 3 23 23 H 1.08998 * 109.46717 * 60.00358 * 1 2 3 24 24 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47471 * 239.99742 * 2 1 3 26 26 H 1.09006 * 109.46544 * 119.99902 * 2 1 3 27 27 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 28 28 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 30 30 H 1.09007 * 109.46730 * 300.00160 * 7 6 3 31 31 H 1.09003 * 109.46946 * 59.99556 * 7 6 3 32 32 H 0.97002 * 119.99423 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5649 1.4444 0.1258 6 16 1.5601 2.2534 -1.5500 7 6 2.1078 3.9649 -1.3017 8 6 1.7741 4.7814 -2.5236 9 7 2.5651 4.9516 -3.5590 10 7 1.8816 5.7705 -4.4728 11 1 2.2014 6.0751 -5.3365 12 6 0.6732 6.0556 -3.8932 13 6 -0.3451 6.8507 -4.4418 14 1 -0.2117 7.3049 -5.4126 15 6 -1.5359 7.0555 -3.7294 16 7 -1.6974 6.5056 -2.5553 17 14 -2.8908 8.1142 -4.4593 18 1 -3.8074 7.2630 -5.2595 19 1 -3.6519 8.7683 -3.3647 20 1 -2.2901 9.1532 -5.3340 21 7 0.6433 5.4398 -2.7139 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 3.9995 0.9053 -0.7160 28 1 3.9281 2.4720 0.1263 29 1 3.8532 0.9571 1.0572 30 1 1.6005 4.3864 -0.4338 31 1 3.1851 3.9813 -1.1363 32 1 -2.5211 6.6469 -2.0628 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083500295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = 53.092783 kcal Electronic energy + Delta-G solvation = -14753.606259 eV Core-core repulsion = 12262.181142 eV Total energy + Delta-G solvation = -2491.425117 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.72527 -35.56516 -33.67789 -31.79012 -30.18784 -29.59008 -27.65600 -25.59336 -23.73003 -21.33439 -20.63354 -19.01740 -17.13300 -16.22268 -15.94955 -14.99522 -14.76522 -14.09067 -13.86987 -13.49646 -13.35194 -12.97446 -12.62768 -12.25736 -11.83608 -11.67893 -11.53658 -11.25055 -11.20956 -10.87236 -10.84591 -10.69187 -10.37161 -9.95649 -9.46887 -9.30926 -8.23476 -7.84619 -7.82467 -7.07091 -6.60123 -4.71203 1.96551 2.94625 3.04978 3.08525 3.11515 3.58375 3.90278 4.47045 4.60560 4.78715 4.96907 5.22407 5.44246 5.46222 5.49525 5.58369 5.62810 5.67576 5.81093 5.95565 6.02673 6.08890 6.18830 6.27322 6.46858 6.80463 7.14201 7.58814 7.96563 8.26093 8.34030 8.73772 9.17865 10.17009 10.33197 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031981 B = 0.005866 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.306312 B = 4772.405619 C = 5399.717796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.099 4.099 3 C -0.071 4.071 4 H 0.084 0.916 5 C -0.147 4.147 6 S -0.222 6.222 7 C 0.025 3.975 8 C 0.221 3.779 9 N -0.398 5.398 10 N -0.561 5.561 11 H 0.414 0.586 12 C 0.407 3.593 13 C -0.453 4.453 14 H 0.086 0.914 15 C 0.082 3.918 16 N -0.724 5.724 17 Si 0.917 3.083 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.262 1.262 21 N -0.546 5.546 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -6.988 5.068 9.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.137 4.137 3 C -0.200 4.200 4 H 0.102 0.898 5 C -0.206 4.206 6 S 0.004 5.996 7 C -0.126 4.126 8 C -0.062 4.062 9 N -0.235 5.235 10 N -0.280 5.280 11 H 0.256 0.744 12 C 0.158 3.842 13 C -0.494 4.494 14 H 0.104 0.896 15 C -0.145 4.145 16 N -0.347 5.347 17 Si 0.741 3.259 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.186 1.186 21 N -0.283 5.283 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.760 -7.799 4.647 9.489 hybrid contribution 0.046 1.443 0.065 1.445 sum 2.806 -6.356 4.712 8.395 Atomic orbital electron populations 1.21854 0.95059 1.01289 1.03212 1.21314 0.96728 0.93512 1.02192 1.23228 0.98621 0.99407 0.98778 0.89788 1.22086 0.93943 1.02434 1.02098 1.87136 1.80828 1.07673 1.23993 1.21180 1.02407 0.92311 0.96665 1.22643 0.91717 0.97897 0.93992 1.77615 1.21830 1.20673 1.03378 1.48033 1.15220 1.46138 1.18600 0.74407 1.20985 0.84642 0.91482 0.87105 1.18381 0.97945 1.28467 1.04635 0.89570 1.25826 0.98988 0.95312 0.94362 1.69991 1.24449 1.30875 1.09409 0.86179 0.80222 0.80081 0.79401 1.19365 1.20057 1.18647 1.71291 1.20510 1.19145 1.17343 0.92728 0.91008 0.93033 0.91318 0.91288 0.91505 0.92418 0.92364 0.88847 0.89770 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.74 37.16 0.36 -1.57 16 2 C -0.10 -1.17 5.40 -26.73 -0.14 -1.31 16 3 C -0.07 -0.97 2.82 -26.73 -0.08 -1.04 16 4 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 5 C -0.15 -1.74 9.10 37.16 0.34 -1.40 16 6 S -0.22 -4.18 19.94 -107.50 -2.14 -6.32 16 7 C 0.02 0.51 6.26 36.00 0.23 0.74 16 8 C 0.22 5.71 7.34 -157.16 -1.15 4.55 16 9 N -0.40 -10.31 12.80 32.35 0.41 -9.90 16 10 N -0.56 -14.16 7.58 31.10 0.24 -13.92 16 11 H 0.41 8.89 8.96 -182.32 -1.63 7.26 16 12 C 0.41 11.34 7.70 -155.88 -1.20 10.14 16 13 C -0.45 -11.94 9.47 -38.02 -0.36 -12.30 16 14 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 15 C 0.08 2.08 5.50 -17.29 -0.10 1.98 16 16 N -0.72 -19.43 11.93 55.56 0.66 -18.76 16 17 Si 0.92 18.32 29.56 -169.99 -5.03 13.30 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 N -0.55 -15.65 9.40 -10.11 -0.10 -15.74 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 1.06 7.13 -51.93 -0.37 0.69 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.71 6.92 -51.93 -0.36 0.35 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 31 H 0.08 1.55 7.14 -51.92 -0.37 1.18 16 32 H 0.28 6.71 8.29 -40.82 -0.34 6.38 16 LS Contribution 287.32 15.07 4.33 4.33 Total: -1.00 -31.28 287.32 -9.39 -40.67 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.66 Total: 6.57 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.10 Total: -0.21 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 1.22 Total: -58.32 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -2.14 Total: -6.32 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.28 -9.39 -40.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083500295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.762 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds