Wall clock time and date at job start Mon Mar 30 2020 03:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.46922 * 54.99919 * 3 2 1 5 5 C 1.53006 * 109.47164 * 174.99670 * 3 2 1 6 6 S 1.81391 * 109.47153 * 294.99854 * 3 2 1 7 7 C 1.81402 * 103.00320 * 175.00383 * 6 3 2 8 8 C 1.50698 * 109.47258 * 180.02562 * 7 6 3 9 9 N 1.31399 * 125.15597 * 269.68846 * 8 7 6 10 10 N 1.40454 * 107.17493 * 179.91288 * 9 8 7 11 11 H 0.97008 * 127.01044 * 180.11732 * 10 9 8 12 12 C 1.37017 * 105.97449 * 0.34832 * 10 9 8 13 13 C 1.40371 * 126.32095 * 179.77173 * 12 10 9 14 14 H 1.08002 * 119.99679 * 359.97438 * 13 12 10 15 15 C 1.40267 * 120.00320 * 179.97438 * 13 12 10 16 16 N 1.30651 * 119.99605 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00104 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47232 * 89.99810 * 17 15 13 19 19 H 1.48499 * 109.47090 * 210.00011 * 17 15 13 20 20 H 1.48506 * 109.46900 * 329.99964 * 17 15 13 21 21 N 1.32227 * 125.15693 * 89.99899 * 8 7 6 22 22 H 1.09000 * 109.46966 * 300.00238 * 1 2 3 23 23 H 1.08998 * 109.46717 * 60.00358 * 1 2 3 24 24 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47471 * 239.99742 * 2 1 3 26 26 H 1.09006 * 109.46544 * 119.99902 * 2 1 3 27 27 H 1.09001 * 109.47002 * 59.99738 * 5 3 2 28 28 H 1.08993 * 109.46955 * 180.02562 * 5 3 2 29 29 H 1.09000 * 109.47050 * 300.00004 * 5 3 2 30 30 H 1.09007 * 109.46730 * 300.00160 * 7 6 3 31 31 H 1.09003 * 109.46946 * 59.99556 * 7 6 3 32 32 H 0.97002 * 119.99423 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5649 1.4444 0.1258 6 16 1.5601 2.2534 -1.5500 7 6 2.1078 3.9649 -1.3017 8 6 1.7741 4.7814 -2.5236 9 7 2.5651 4.9516 -3.5590 10 7 1.8816 5.7705 -4.4728 11 1 2.2014 6.0751 -5.3365 12 6 0.6732 6.0556 -3.8932 13 6 -0.3451 6.8507 -4.4418 14 1 -0.2117 7.3049 -5.4126 15 6 -1.5359 7.0555 -3.7294 16 7 -1.6974 6.5056 -2.5553 17 14 -2.8908 8.1142 -4.4593 18 1 -3.8074 7.2630 -5.2595 19 1 -3.6519 8.7683 -3.3647 20 1 -2.2901 9.1532 -5.3340 21 7 0.6433 5.4398 -2.7139 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 3.9995 0.9053 -0.7160 28 1 3.9281 2.4720 0.1263 29 1 3.8532 0.9571 1.0572 30 1 1.6005 4.3864 -0.4338 31 1 3.1851 3.9813 -1.1363 32 1 -2.5211 6.6469 -2.0628 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083500295.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:03 Heat of formation + Delta-G solvation = 34.203612 kcal Electronic energy + Delta-G solvation = -14754.425355 eV Core-core repulsion = 12262.181142 eV Total energy + Delta-G solvation = -2492.244213 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.72168 -36.57822 -35.61963 -33.66073 -31.66120 -31.19930 -29.44535 -27.56596 -24.71159 -22.70972 -22.37834 -20.86908 -19.11270 -17.97064 -17.43198 -16.55122 -16.46221 -15.51949 -15.18537 -14.86179 -14.84632 -14.33169 -14.22977 -13.72385 -13.52953 -12.99109 -12.82940 -12.73235 -12.63002 -12.21492 -12.15447 -11.88695 -11.82772 -11.73880 -11.27948 -10.66301 -10.20548 -9.89378 -9.86431 -8.55845 -8.50503 -6.74897 0.48820 1.28371 1.45400 1.60856 1.64230 1.79251 2.21506 2.60523 2.67491 3.45054 3.67732 3.77877 3.96073 3.98775 4.25338 4.42068 4.50683 4.63741 4.73886 4.85060 4.89119 5.00711 5.09518 5.21924 5.23550 5.30095 5.46841 5.62887 6.01224 6.27206 6.38718 6.76034 7.23725 8.16887 8.44501 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.031981 B = 0.005866 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.306312 B = 4772.405619 C = 5399.717796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.096 4.096 3 C -0.053 4.053 4 H 0.090 0.910 5 C -0.144 4.144 6 S -0.275 6.275 7 C 0.031 3.969 8 C 0.213 3.787 9 N -0.412 5.412 10 N -0.559 5.559 11 H 0.428 0.572 12 C 0.379 3.621 13 C -0.474 4.474 14 H 0.104 0.896 15 C 0.035 3.965 16 N -0.766 5.766 17 Si 1.004 2.996 18 H -0.263 1.263 19 H -0.268 1.268 20 H -0.251 1.251 21 N -0.584 5.584 22 H 0.058 0.942 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.657 -7.333 5.696 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 C -0.182 4.182 4 H 0.108 0.892 5 C -0.203 4.203 6 S -0.050 6.050 7 C -0.119 4.119 8 C -0.071 4.071 9 N -0.249 5.249 10 N -0.280 5.280 11 H 0.272 0.728 12 C 0.130 3.870 13 C -0.516 4.516 14 H 0.122 0.878 15 C -0.189 4.189 16 N -0.389 5.389 17 Si 0.823 3.177 18 H -0.188 1.188 19 H -0.193 1.193 20 H -0.174 1.174 21 N -0.321 5.321 22 H 0.077 0.923 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.510 -8.148 5.258 10.017 hybrid contribution 0.167 1.458 -0.072 1.469 sum 2.678 -6.690 5.186 8.878 Atomic orbital electron populations 1.21839 0.95658 1.02100 1.01811 1.21369 0.96182 0.92246 1.03632 1.23388 1.00092 0.99667 0.95019 0.89186 1.22067 0.92154 1.02428 1.03612 1.87253 1.81691 1.07068 1.28969 1.21177 1.03502 0.92740 0.94444 1.23445 0.90837 0.97600 0.95192 1.77521 1.22341 1.21254 1.03776 1.47951 1.14778 1.46133 1.19182 0.72835 1.21449 0.85714 0.92211 0.87655 1.18947 0.98435 1.28532 1.05637 0.87799 1.26953 1.01228 0.96254 0.94424 1.70101 1.25674 1.32128 1.11037 0.84891 0.76225 0.77981 0.78606 1.18751 1.19289 1.17398 1.71252 1.22086 1.20439 1.18353 0.92315 0.94172 0.91167 0.91676 0.87757 0.91796 0.93105 0.89150 0.88921 0.87909 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 9.74 71.98 0.70 -2.93 16 2 C -0.10 -2.02 5.40 30.59 0.17 -1.86 16 3 C -0.05 -1.35 2.82 30.60 0.09 -1.26 16 4 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 5 C -0.14 -3.05 9.10 71.98 0.66 -2.40 16 6 S -0.27 -10.45 19.94 -56.49 -1.13 -11.58 16 7 C 0.03 1.31 6.26 71.24 0.45 1.76 16 8 C 0.21 11.24 7.34 138.74 1.02 12.26 16 9 N -0.41 -21.76 12.80 -51.55 -0.66 -22.42 16 10 N -0.56 -28.78 7.58 -55.50 -0.42 -29.21 16 11 H 0.43 18.63 8.96 -213.08 -1.91 16.72 16 12 C 0.38 21.55 7.70 133.83 1.03 22.58 16 13 C -0.47 -25.16 9.47 23.28 0.22 -24.94 16 14 H 0.10 4.92 7.85 -2.91 -0.02 4.90 16 15 C 0.03 1.76 5.50 85.36 0.47 2.23 16 16 N -0.77 -41.65 11.93 21.88 0.26 -41.39 16 17 Si 1.00 36.92 29.56 68.60 2.03 38.95 16 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.25 -8.67 7.11 99.48 0.71 -7.96 16 21 N -0.58 -34.40 9.40 -185.91 -1.75 -36.15 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.04 1.18 7.13 -2.39 -0.02 1.16 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.15 6.92 -2.39 -0.02 1.13 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 3.79 8.14 -2.39 -0.02 3.77 16 31 H 0.10 3.79 7.14 -2.39 -0.02 3.77 16 32 H 0.29 13.93 8.29 -92.71 -0.77 13.16 16 Total: -1.00 -68.93 287.32 2.34 -66.59 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.79 Total: 29.76 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.79 Total: 5.44 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -2.57 Total: -129.16 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.13 Total: -11.58 kcal Total: -68.93 2.34 -66.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083500295.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.789 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds