Wall clock time and date at job start Mon Mar 30 2020 03:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30130 * 121.05625 * 2 1 4 4 S 1.69955 * 105.76086 * 179.97438 * 3 2 1 5 5 C 1.72306 * 94.57307 * 0.02562 * 4 3 2 6 6 N 1.38315 * 127.50439 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00270 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47091 * 270.00432 * 7 6 5 9 9 H 1.08000 * 120.00236 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99728 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00035 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99851 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47116 * 90.00019 * 12 10 8 14 14 H 1.48503 * 109.47396 * 210.00085 * 12 10 8 15 15 H 1.48501 * 109.47117 * 330.00013 * 12 10 8 16 16 C 1.46504 * 119.99573 * 0.02562 * 6 5 4 17 17 C 1.53006 * 109.46883 * 239.99530 * 16 6 5 18 18 C 1.52999 * 109.47050 * 120.00328 * 16 6 5 19 19 N 1.31283 * 121.06476 * 180.29267 * 2 1 3 20 20 H 1.09004 * 109.46948 * 89.97532 * 1 2 3 21 21 H 1.09001 * 109.47101 * 209.97399 * 1 2 3 22 22 H 1.09004 * 109.47225 * 329.97504 * 1 2 3 23 23 H 1.09003 * 109.46653 * 30.00103 * 7 6 5 24 24 H 1.08997 * 109.47041 * 150.00237 * 7 6 5 25 25 H 0.97000 * 120.00126 * 180.02562 * 11 10 8 26 26 H 1.08993 * 109.47378 * 359.97438 * 16 6 5 27 27 H 1.09001 * 109.46801 * 300.00349 * 17 16 6 28 28 H 1.09001 * 109.46998 * 59.99945 * 17 16 6 29 29 H 1.09000 * 109.47050 * 180.02562 * 17 16 6 30 30 H 1.09000 * 109.47160 * 179.97438 * 18 16 6 31 31 H 1.09002 * 109.46719 * 299.99449 * 18 16 6 32 32 H 1.08993 * 109.47839 * 59.99291 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1148 0.0000 4 16 3.8177 0.6664 0.0007 5 6 3.4971 -1.0265 0.0002 6 7 4.4185 -2.0581 0.0000 7 6 3.9604 -3.4496 -0.0010 8 6 3.8026 -3.9275 1.4194 9 1 4.0221 -3.2615 2.2408 10 6 3.3781 -5.2151 1.6704 11 7 3.1113 -6.0262 0.6702 12 14 3.1832 -5.8077 3.4311 13 1 1.8019 -5.5263 3.8981 14 1 3.4383 -7.2694 3.4926 15 1 4.1545 -5.0987 4.3024 16 6 5.8527 -1.7590 0.0007 17 6 6.4997 -2.3604 -1.2486 18 6 6.4987 -2.3618 1.2498 19 7 2.1844 -1.1245 -0.0057 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 3.0016 -3.5160 -0.5153 24 1 4.6923 -4.0727 -0.5149 25 1 2.8122 -6.9319 0.8468 26 1 5.9987 -0.6789 0.0010 27 1 6.3537 -3.4406 -1.2492 28 1 6.0394 -1.9311 -2.1385 29 1 7.5668 -2.1384 -1.2479 30 1 7.5658 -2.1397 1.2502 31 1 6.0378 -1.9334 2.1399 32 1 6.3527 -3.4419 1.2493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083647688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:30 Heat of formation + Delta-G solvation = 46.613132 kcal Electronic energy + Delta-G solvation = -15504.209939 eV Core-core repulsion = 13012.503844 eV Total energy + Delta-G solvation = -2491.706096 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.47681 -37.58167 -33.00440 -32.53894 -30.23316 -29.10627 -27.57577 -26.87028 -23.70740 -22.62741 -19.92038 -18.89852 -18.03088 -16.61319 -16.45409 -14.97596 -14.82350 -14.10826 -13.80201 -13.52195 -13.45054 -12.46523 -12.32006 -12.22203 -11.93478 -11.73751 -11.46296 -11.30917 -11.24865 -11.03721 -10.78717 -10.67790 -10.48550 -10.34167 -10.01131 -9.49705 -8.83908 -8.73461 -8.53136 -7.19942 -6.13899 -4.19706 1.43674 1.64978 2.42743 3.24711 3.30102 3.31528 3.38049 3.44237 4.34746 4.81395 5.09940 5.19301 5.34836 5.45538 5.64325 5.81359 5.84664 5.96044 5.96969 6.09046 6.23245 6.29216 6.43365 6.52594 6.76074 6.84952 7.25046 7.53917 7.77745 7.86597 8.07089 8.54330 8.82928 9.44511 10.92614 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.009417 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.057324 B = 2972.710203 C = 3824.684820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.308 3.692 3 N -0.527 5.527 4 S 0.096 5.904 5 C 0.376 3.624 6 N -0.524 5.524 7 C 0.250 3.750 8 C -0.524 4.524 9 H 0.059 0.941 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.143 3.857 17 C -0.162 4.162 18 C -0.157 4.157 19 N -0.578 5.578 20 H 0.081 0.919 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.264 0.736 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 7.868 -2.147 8.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.019 3.981 3 N -0.362 5.362 4 S 0.230 5.770 5 C -0.003 4.003 6 N -0.237 5.237 7 C 0.130 3.870 8 C -0.563 4.563 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.205 1.205 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.039 3.961 17 C -0.220 4.220 18 C -0.216 4.216 19 N -0.315 5.315 20 H 0.100 0.900 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.011 8.713 -2.206 9.842 hybrid contribution -0.658 -1.308 1.016 1.782 sum 3.353 7.405 -1.190 8.215 Atomic orbital electron populations 1.20317 0.84899 1.03798 1.03462 1.23234 0.99453 0.82735 0.92706 1.77501 0.96492 1.25045 1.37206 1.84508 1.15009 1.01307 1.76199 1.25278 0.90331 0.93523 0.91139 1.47082 1.02166 1.05346 1.69147 1.19578 0.96560 0.72688 0.98151 1.21364 1.45765 0.97363 0.91812 0.92231 1.24891 0.95018 0.96528 0.97355 1.69918 1.45326 1.07137 1.30691 0.86519 0.78698 0.77770 0.84590 1.20531 1.21130 1.19897 1.21207 0.78940 0.99183 0.96800 1.22183 1.00134 1.02945 0.96768 1.22166 0.98713 1.04215 0.96470 1.67364 1.03161 1.28237 1.32750 0.90024 0.89423 0.90278 0.93331 0.93945 0.92598 0.90614 0.90857 0.92525 0.91400 0.92391 0.92380 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.42 36.01 0.38 -0.56 16 2 C 0.31 6.04 7.56 -159.04 -1.20 4.83 16 3 N -0.53 -10.33 12.15 29.54 0.36 -9.98 16 4 S 0.10 1.76 22.28 -107.50 -2.40 -0.63 16 5 C 0.38 7.91 7.95 -86.36 -0.69 7.22 16 6 N -0.52 -10.73 2.48 -168.94 -0.42 -11.15 16 7 C 0.25 6.03 4.76 -5.20 -0.02 6.01 16 8 C -0.52 -13.73 7.83 -34.44 -0.27 -14.00 16 9 H 0.06 1.59 7.63 -52.49 -0.40 1.19 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.00 13.29 55.43 0.74 -24.27 16 12 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 16 C 0.14 2.32 3.31 -67.93 -0.22 2.09 16 17 C -0.16 -2.27 9.17 37.16 0.34 -1.93 16 18 C -0.16 -2.51 8.47 37.16 0.31 -2.19 16 19 N -0.58 -12.86 10.05 -14.58 -0.15 -13.01 16 20 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 21 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.05 1.32 7.73 -51.93 -0.40 0.92 16 24 H 0.04 1.03 6.43 -51.93 -0.33 0.70 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.08 1.12 6.57 -51.93 -0.34 0.78 16 27 H 0.07 1.13 6.66 -51.93 -0.35 0.79 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.57 6.92 -51.93 -0.36 1.21 16 LS Contribution 283.29 15.07 4.27 4.27 Total: -1.00 -29.66 283.29 -8.37 -38.03 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -4.28 Total: -2.35 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.48 Total: 3.12 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.53 Total: -58.40 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.40 Total: -0.63 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.66 -8.37 -38.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083647688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.644 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds