Wall clock time and date at job start Mon Mar 30 2020 03:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30130 * 121.05625 * 2 1 4 4 S 1.69955 * 105.76086 * 179.97438 * 3 2 1 5 5 C 1.72306 * 94.57307 * 0.02562 * 4 3 2 6 6 N 1.38315 * 127.50439 * 179.97438 * 5 4 3 7 7 C 1.46500 * 120.00270 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47091 * 270.00432 * 7 6 5 9 9 H 1.08000 * 120.00236 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99728 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00035 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99851 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47116 * 90.00019 * 12 10 8 14 14 H 1.48503 * 109.47396 * 210.00085 * 12 10 8 15 15 H 1.48501 * 109.47117 * 330.00013 * 12 10 8 16 16 C 1.46504 * 119.99573 * 0.02562 * 6 5 4 17 17 C 1.53006 * 109.46883 * 239.99530 * 16 6 5 18 18 C 1.52999 * 109.47050 * 120.00328 * 16 6 5 19 19 N 1.31283 * 121.06476 * 180.29267 * 2 1 3 20 20 H 1.09004 * 109.46948 * 89.97532 * 1 2 3 21 21 H 1.09001 * 109.47101 * 209.97399 * 1 2 3 22 22 H 1.09004 * 109.47225 * 329.97504 * 1 2 3 23 23 H 1.09003 * 109.46653 * 30.00103 * 7 6 5 24 24 H 1.08997 * 109.47041 * 150.00237 * 7 6 5 25 25 H 0.97000 * 120.00126 * 180.02562 * 11 10 8 26 26 H 1.08993 * 109.47378 * 359.97438 * 16 6 5 27 27 H 1.09001 * 109.46801 * 300.00349 * 17 16 6 28 28 H 1.09001 * 109.46998 * 59.99945 * 17 16 6 29 29 H 1.09000 * 109.47050 * 180.02562 * 17 16 6 30 30 H 1.09000 * 109.47160 * 179.97438 * 18 16 6 31 31 H 1.09002 * 109.46719 * 299.99449 * 18 16 6 32 32 H 1.08993 * 109.47839 * 59.99291 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1148 0.0000 4 16 3.8177 0.6664 0.0007 5 6 3.4971 -1.0265 0.0002 6 7 4.4185 -2.0581 0.0000 7 6 3.9604 -3.4496 -0.0010 8 6 3.8026 -3.9275 1.4194 9 1 4.0221 -3.2615 2.2408 10 6 3.3781 -5.2151 1.6704 11 7 3.1113 -6.0262 0.6702 12 14 3.1832 -5.8077 3.4311 13 1 1.8019 -5.5263 3.8981 14 1 3.4383 -7.2694 3.4926 15 1 4.1545 -5.0987 4.3024 16 6 5.8527 -1.7590 0.0007 17 6 6.4997 -2.3604 -1.2486 18 6 6.4987 -2.3618 1.2498 19 7 2.1844 -1.1245 -0.0057 20 1 -0.3633 0.0004 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3634 0.8898 0.5142 23 1 3.0016 -3.5160 -0.5153 24 1 4.6923 -4.0727 -0.5149 25 1 2.8122 -6.9319 0.8468 26 1 5.9987 -0.6789 0.0010 27 1 6.3537 -3.4406 -1.2492 28 1 6.0394 -1.9311 -2.1385 29 1 7.5668 -2.1384 -1.2479 30 1 7.5658 -2.1397 1.2502 31 1 6.0378 -1.9334 2.1399 32 1 6.3527 -3.4419 1.2493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083647688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:29 Heat of formation + Delta-G solvation = 29.597896 kcal Electronic energy + Delta-G solvation = -15504.947775 eV Core-core repulsion = 13012.503844 eV Total energy + Delta-G solvation = -2492.443932 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02078 -39.08015 -34.93954 -34.02749 -31.82148 -30.42922 -29.42684 -28.08713 -25.56576 -24.14828 -21.37341 -20.48235 -19.50486 -18.60881 -18.03052 -16.67164 -16.51354 -15.67890 -15.18933 -14.98905 -14.87022 -14.18229 -13.54391 -13.48542 -13.43118 -13.22278 -13.00893 -12.86073 -12.72421 -12.62158 -12.47700 -12.36271 -12.05436 -11.82370 -11.67033 -11.38049 -10.61373 -10.40696 -10.26251 -8.80954 -8.16605 -6.31601 -0.12061 0.08504 0.94408 1.37889 1.40239 1.48783 1.84648 1.93570 2.39407 3.11006 3.36896 3.82679 4.11620 4.21943 4.39534 4.59560 4.66180 4.70940 4.80401 4.85441 4.95351 4.96057 5.05804 5.11059 5.27574 5.36208 5.48076 5.65545 5.93935 6.05971 6.17003 6.74765 7.02837 7.36019 8.86547 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.020255 B = 0.009417 C = 0.007319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.057324 B = 2972.710203 C = 3824.684820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.299 3.701 3 N -0.541 5.541 4 S 0.149 5.851 5 C 0.351 3.649 6 N -0.530 5.530 7 C 0.271 3.729 8 C -0.525 4.525 9 H 0.051 0.949 10 C 0.017 3.983 11 N -0.923 5.923 12 Si 0.955 3.045 13 H -0.282 1.282 14 H -0.278 1.278 15 H -0.266 1.266 16 C 0.134 3.866 17 C -0.155 4.155 18 C -0.151 4.151 19 N -0.619 5.619 20 H 0.101 0.899 21 H 0.084 0.916 22 H 0.100 0.900 23 H 0.010 0.990 24 H 0.037 0.963 25 H 0.266 0.734 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.539 9.052 -1.659 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.010 3.990 3 N -0.378 5.378 4 S 0.284 5.716 5 C -0.027 4.027 6 N -0.243 5.243 7 C 0.149 3.851 8 C -0.564 4.564 9 H 0.069 0.931 10 C -0.182 4.182 11 N -0.563 5.563 12 Si 0.781 3.219 13 H -0.208 1.208 14 H -0.203 1.203 15 H -0.191 1.191 16 C 0.032 3.968 17 C -0.213 4.213 18 C -0.209 4.209 19 N -0.357 5.357 20 H 0.119 0.881 21 H 0.103 0.897 22 H 0.119 0.881 23 H 0.028 0.972 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.916 9.926 -1.718 11.209 hybrid contribution -0.913 -1.578 0.831 2.003 sum 4.003 8.348 -0.887 9.301 Atomic orbital electron populations 1.20487 0.82061 1.04680 1.04986 1.23853 1.01182 0.81989 0.91939 1.77427 0.97404 1.25398 1.37523 1.84179 1.14003 0.98158 1.75286 1.25556 0.90504 0.95072 0.91563 1.47084 1.03769 1.04026 1.69463 1.19002 0.94561 0.74949 0.96556 1.21526 1.45143 0.97283 0.92487 0.93076 1.25633 0.94873 0.96810 1.00911 1.70018 1.46309 1.07464 1.32513 0.85597 0.78373 0.77616 0.80329 1.20847 1.20324 1.19083 1.21584 0.76658 1.00572 0.98000 1.22152 1.02269 1.01345 0.95574 1.22109 1.01146 1.02034 0.95637 1.67433 1.04328 1.30245 1.33686 0.88083 0.89719 0.88103 0.97187 0.94486 0.92491 0.88628 0.92876 0.92474 0.87641 0.88324 0.93892 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.42 71.24 0.74 -0.97 16 2 C 0.30 11.50 7.56 139.40 1.05 12.56 16 3 N -0.54 -20.47 12.15 -60.45 -0.73 -21.21 16 4 S 0.15 5.26 22.28 -56.49 -1.26 4.00 16 5 C 0.35 14.70 7.95 178.86 1.42 16.12 16 6 N -0.53 -21.77 2.48 -688.41 -1.71 -23.47 16 7 C 0.27 13.47 4.76 85.63 0.41 13.88 16 8 C -0.53 -28.03 7.83 25.60 0.20 -27.83 16 9 H 0.05 2.77 7.63 -2.91 -0.02 2.74 16 10 C 0.02 0.94 5.46 84.66 0.46 1.40 16 11 N -0.92 -52.70 13.29 21.45 0.28 -52.42 16 12 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 13 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 14 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 C 0.13 4.17 3.31 44.99 0.15 4.32 16 17 C -0.16 -4.09 9.17 71.98 0.66 -3.43 16 18 C -0.15 -4.60 8.47 71.98 0.61 -3.99 16 19 N -0.62 -27.70 10.05 -200.03 -2.01 -29.71 16 20 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 21 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 22 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 23 H 0.01 0.57 7.73 -2.39 -0.02 0.55 16 24 H 0.04 1.87 6.43 -2.39 -0.02 1.85 16 25 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.10 2.59 6.57 -2.39 -0.02 2.58 16 27 H 0.05 1.62 6.66 -2.39 -0.02 1.60 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 2.08 6.92 -2.39 -0.02 2.06 16 Total: -1.00 -64.26 283.29 3.42 -60.85 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.11 Total: 4.69 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 5.71 Total: 12.04 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -4.17 Total: -126.81 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.26 Total: 4.00 kcal Total: -64.26 3.42 -60.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083647688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.445 kcal (2) G-P(sol) polarization free energy of solvation -64.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds