Wall clock time and date at job start Mon Mar 30 2020 03:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47177 * 2 1 4 4 C 1.52994 * 109.47332 * 120.00026 * 2 1 3 5 5 N 1.46507 * 109.47354 * 174.99964 * 4 2 1 6 6 C 1.46501 * 120.00127 * 270.00415 * 5 4 2 7 7 C 1.50699 * 109.46994 * 269.99982 * 6 5 4 8 8 H 1.08004 * 120.00158 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00011 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00194 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46952 * 89.99878 * 11 9 7 13 13 H 1.48500 * 109.47345 * 209.99767 * 11 9 7 14 14 H 1.48501 * 109.46855 * 330.00153 * 11 9 7 15 15 C 1.38313 * 120.00008 * 89.99873 * 5 4 2 16 16 N 1.31627 * 127.50288 * 180.02562 * 15 5 4 17 17 C 1.31296 * 116.79208 * 179.97438 * 16 15 5 18 18 N 1.30133 * 117.87447 * 0.02562 * 17 16 15 19 19 S 1.69949 * 105.76454 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47292 * 299.99556 * 1 2 3 21 21 H 1.08998 * 109.47690 * 59.99951 * 1 2 3 22 22 H 1.08997 * 109.47015 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47292 * 240.00444 * 2 1 3 24 24 H 1.09004 * 109.46647 * 60.00049 * 3 2 1 25 25 H 1.08998 * 109.47305 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46850 * 300.00563 * 3 2 1 27 27 H 1.09002 * 109.47237 * 55.00004 * 4 2 1 28 28 H 1.09001 * 109.47454 * 294.99972 * 4 2 1 29 29 H 1.08997 * 109.47037 * 29.99351 * 6 5 4 30 30 H 1.08996 * 109.47389 * 149.99779 * 6 5 4 31 31 H 0.96999 * 120.00387 * 179.97438 * 10 9 7 32 32 H 1.07999 * 121.06180 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.3422 -3.0659 1.5958 8 1 4.0437 -2.8971 2.6199 9 6 4.9220 -4.2638 1.2352 10 7 5.1112 -5.2009 2.1383 11 14 5.4388 -4.5556 -0.5359 12 1 6.8415 -4.1052 -0.7228 13 1 5.3381 -6.0037 -0.8488 14 1 4.5478 -3.7897 -1.4441 15 6 4.2878 0.1748 1.7293 16 7 5.6025 0.2322 1.7579 17 6 6.1366 1.2884 2.3262 18 7 5.3332 2.1887 2.8135 19 16 3.7615 1.6186 2.5087 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6054 -1.7198 1.2951 28 1 1.7517 -0.1583 2.1370 29 1 3.4758 -2.3721 -0.2268 30 1 5.0851 -1.7020 0.1323 31 1 5.5187 -6.0438 1.8847 32 1 7.2084 1.4062 2.3874 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083651352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:55 Heat of formation + Delta-G solvation = 49.762509 kcal Electronic energy + Delta-G solvation = -15527.931531 eV Core-core repulsion = 13036.362002 eV Total energy + Delta-G solvation = -2491.569528 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.41749 -37.73310 -34.45224 -32.60119 -30.84829 -28.51237 -27.18247 -26.24547 -23.98208 -22.31682 -20.12247 -19.29496 -18.16852 -17.03518 -16.39191 -15.12751 -14.96739 -14.76062 -14.13639 -14.01265 -13.74613 -12.86032 -12.51482 -12.37948 -12.08959 -11.88714 -11.55350 -11.43500 -11.10724 -11.06258 -10.76359 -10.61952 -10.56176 -10.41367 -9.97941 -9.57218 -8.94526 -8.82176 -8.70031 -7.24947 -6.19523 -4.20494 1.35324 1.55142 2.38118 3.20142 3.25096 3.28133 3.34086 3.41849 4.28831 4.82122 4.89262 4.97113 5.11478 5.14668 5.46126 5.61715 5.68849 5.84756 5.90412 5.94521 6.07274 6.10795 6.24534 6.32180 6.39623 6.47234 6.71007 7.30813 7.41963 7.58435 8.32902 8.44332 8.82998 9.38294 10.93416 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.009616 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.205470 B = 2911.109136 C = 3822.981805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.152 4.152 4 C 0.121 3.879 5 N -0.523 5.523 6 C 0.223 3.777 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.077 3.923 10 N -0.892 5.892 11 Si 0.875 3.125 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.372 3.628 16 N -0.584 5.584 17 C 0.286 3.714 18 N -0.529 5.529 19 S 0.121 5.879 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 10.646 -4.589 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.210 4.210 4 C -0.002 4.002 5 N -0.235 5.235 6 C 0.101 3.899 7 C -0.573 4.573 8 H 0.094 0.906 9 C -0.126 4.126 10 N -0.530 5.530 11 Si 0.701 3.299 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.191 1.191 15 C -0.006 4.006 16 N -0.320 5.320 17 C -0.024 4.024 18 N -0.363 5.363 19 S 0.254 5.746 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -7.435 11.318 -4.076 14.142 hybrid contribution 1.169 -1.117 -1.133 1.975 sum -6.265 10.201 -5.209 13.056 Atomic orbital electron populations 1.21754 0.94279 1.02098 1.01923 1.21651 0.96129 0.96806 0.99181 1.22072 1.01398 0.95649 1.01869 1.21854 0.78058 1.02709 0.97592 1.46461 1.03948 1.17675 1.55401 1.19951 0.93999 0.82222 0.93751 1.21242 1.41694 0.97763 0.96556 0.90601 1.24814 0.94802 0.95678 0.97342 1.69884 1.43277 1.06190 1.33635 0.86880 0.80006 0.77755 0.85228 1.19738 1.20936 1.19062 1.25267 0.90579 0.92940 0.91847 1.67498 1.07432 1.26092 1.30996 1.24769 1.02297 0.84561 0.90801 1.77584 0.96790 1.28573 1.33368 1.84641 1.16823 1.15707 1.57474 0.92437 0.92449 0.92251 0.90415 0.91943 0.92779 0.92627 0.88229 0.90827 0.94467 0.93957 0.92368 0.77700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 37.16 0.34 -1.07 16 2 C -0.12 -1.48 3.13 -90.62 -0.28 -1.77 16 3 C -0.15 -1.90 7.67 37.16 0.28 -1.62 16 4 C 0.12 1.85 5.00 -4.04 -0.02 1.83 16 5 N -0.52 -10.19 2.42 -176.54 -0.43 -10.62 16 6 C 0.22 5.04 4.40 -5.19 -0.02 5.02 16 7 C -0.53 -14.48 9.94 -34.44 -0.34 -14.82 16 8 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 9 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 10 N -0.89 -26.54 13.96 55.43 0.77 -25.76 16 11 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 15 C 0.37 7.36 6.51 -86.36 -0.56 6.79 16 16 N -0.58 -12.24 10.10 -18.62 -0.19 -12.43 16 17 C 0.29 5.16 12.33 -93.99 -1.16 4.00 16 18 N -0.53 -9.66 12.20 26.22 0.32 -9.34 16 19 S 0.12 2.07 19.60 -107.50 -2.11 -0.03 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.06 0.74 7.25 -51.93 -0.38 0.36 16 25 H 0.05 0.80 5.80 -51.93 -0.30 0.50 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.10 1.53 8.07 -51.93 -0.42 1.11 16 28 H 0.07 1.04 7.23 -51.93 -0.38 0.66 16 29 H 0.04 0.80 7.13 -51.93 -0.37 0.43 16 30 H 0.04 1.01 7.15 -51.93 -0.37 0.64 16 31 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.21 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 277.91 15.07 4.19 4.19 Total: -1.00 -30.84 277.91 -8.31 -39.15 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.34 Total: -1.38 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.86 Total: 0.41 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.48 Total: -58.16 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.11 Total: -0.03 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.84 -8.31 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083651352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.917 kcal (2) G-P(sol) polarization free energy of solvation -30.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds