Wall clock time and date at job start Mon Mar 30 2020 03:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47177 * 2 1 4 4 C 1.52994 * 109.47332 * 120.00026 * 2 1 3 5 5 N 1.46507 * 109.47354 * 174.99964 * 4 2 1 6 6 C 1.46501 * 120.00127 * 270.00415 * 5 4 2 7 7 C 1.50699 * 109.46994 * 269.99982 * 6 5 4 8 8 H 1.08004 * 120.00158 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99914 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00011 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00194 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46952 * 89.99878 * 11 9 7 13 13 H 1.48500 * 109.47345 * 209.99767 * 11 9 7 14 14 H 1.48501 * 109.46855 * 330.00153 * 11 9 7 15 15 C 1.38313 * 120.00008 * 89.99873 * 5 4 2 16 16 N 1.31627 * 127.50288 * 180.02562 * 15 5 4 17 17 C 1.31296 * 116.79208 * 179.97438 * 16 15 5 18 18 N 1.30133 * 117.87447 * 0.02562 * 17 16 15 19 19 S 1.69949 * 105.76454 * 359.97438 * 18 17 16 20 20 H 1.09004 * 109.47292 * 299.99556 * 1 2 3 21 21 H 1.08998 * 109.47690 * 59.99951 * 1 2 3 22 22 H 1.08997 * 109.47015 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47292 * 240.00444 * 2 1 3 24 24 H 1.09004 * 109.46647 * 60.00049 * 3 2 1 25 25 H 1.08998 * 109.47305 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.46850 * 300.00563 * 3 2 1 27 27 H 1.09002 * 109.47237 * 55.00004 * 4 2 1 28 28 H 1.09001 * 109.47454 * 294.99972 * 4 2 1 29 29 H 1.08997 * 109.47037 * 29.99351 * 6 5 4 30 30 H 1.08996 * 109.47389 * 149.99779 * 6 5 4 31 31 H 0.96999 * 120.00387 * 179.97438 * 10 9 7 32 32 H 1.07999 * 121.06180 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.3422 -3.0659 1.5958 8 1 4.0437 -2.8971 2.6199 9 6 4.9220 -4.2638 1.2352 10 7 5.1112 -5.2009 2.1383 11 14 5.4388 -4.5556 -0.5359 12 1 6.8415 -4.1052 -0.7228 13 1 5.3381 -6.0037 -0.8488 14 1 4.5478 -3.7897 -1.4441 15 6 4.2878 0.1748 1.7293 16 7 5.6025 0.2322 1.7579 17 6 6.1366 1.2884 2.3262 18 7 5.3332 2.1887 2.8135 19 16 3.7615 1.6186 2.5087 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6054 -1.7198 1.2951 28 1 1.7517 -0.1583 2.1370 29 1 3.4758 -2.3721 -0.2268 30 1 5.0851 -1.7020 0.1323 31 1 5.5187 -6.0438 1.8847 32 1 7.2084 1.4062 2.3874 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083651352.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:55 Heat of formation + Delta-G solvation = 31.438395 kcal Electronic energy + Delta-G solvation = -15528.726124 eV Core-core repulsion = 13036.362002 eV Total energy + Delta-G solvation = -2492.364122 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.88096 -39.05798 -35.78810 -34.55067 -32.36595 -30.29572 -28.16007 -27.46715 -25.66328 -23.91070 -21.20151 -20.87276 -19.56930 -19.08992 -17.83502 -16.69016 -16.52175 -15.97312 -15.71688 -15.37476 -14.91144 -14.57611 -14.03368 -13.70093 -13.42808 -13.17546 -12.80735 -12.72760 -12.62835 -12.47766 -12.29645 -11.93186 -11.86864 -11.73096 -11.63901 -11.43622 -10.82622 -10.42922 -10.25398 -8.72976 -8.33119 -6.39616 -0.11260 0.08861 0.97768 1.35661 1.39105 1.46581 1.89483 1.98222 2.31379 3.01651 3.47530 3.83637 3.90262 4.13613 4.37765 4.55858 4.62578 4.69954 4.75834 4.82997 4.88384 4.99485 5.03980 5.07269 5.23333 5.39161 5.40821 5.45588 5.72657 6.03396 6.26120 6.62147 6.98097 7.23963 8.83468 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.020238 B = 0.009616 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.205470 B = 2911.109136 C = 3822.981805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.115 3.885 5 N -0.531 5.531 6 C 0.235 3.765 7 C -0.534 4.534 8 H 0.028 0.972 9 C 0.017 3.983 10 N -0.943 5.943 11 Si 0.945 3.055 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.236 1.236 15 C 0.349 3.651 16 N -0.623 5.623 17 C 0.285 3.715 18 N -0.544 5.544 19 S 0.175 5.825 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.033 0.967 31 H 0.268 0.732 32 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 11.973 -6.262 15.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 C -0.207 4.207 4 C -0.007 4.007 5 N -0.243 5.243 6 C 0.112 3.888 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.182 4.182 10 N -0.583 5.583 11 Si 0.767 3.233 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.159 1.159 15 C -0.028 4.028 16 N -0.361 5.361 17 C -0.025 4.025 18 N -0.378 5.378 19 S 0.308 5.692 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.080 0.920 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.441 12.688 -5.744 16.286 hybrid contribution 1.440 -1.449 -0.472 2.097 sum -7.002 11.238 -6.216 14.627 Atomic orbital electron populations 1.21730 0.91859 1.02734 1.03203 1.21596 0.97948 0.96315 0.97138 1.22038 0.99696 0.95789 1.03135 1.22143 0.75797 1.03141 0.99650 1.46470 1.05345 1.16948 1.55562 1.19590 0.94316 0.82100 0.92821 1.21430 1.41034 0.99296 0.95532 0.95395 1.25769 0.94766 0.95292 1.02324 1.70044 1.44914 1.06996 1.36365 0.85765 0.79789 0.78072 0.79639 1.19853 1.20487 1.15923 1.25501 0.90875 0.94075 0.92350 1.67534 1.08592 1.27771 1.32170 1.25224 1.03648 0.83677 0.89992 1.77510 0.97682 1.29067 1.33580 1.84347 1.15588 1.13349 1.55931 0.91473 0.90863 0.92001 0.91152 0.91323 0.95312 0.90708 0.88754 0.89835 0.92527 0.94933 0.92249 0.74656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.11 -2.53 3.13 -10.79 -0.03 -2.56 16 3 C -0.15 -3.37 7.67 71.98 0.55 -2.82 16 4 C 0.11 3.38 5.00 86.38 0.43 3.81 16 5 N -0.53 -20.51 2.42 -712.46 -1.73 -22.23 16 6 C 0.24 10.55 4.40 85.63 0.38 10.93 16 7 C -0.53 -29.62 9.94 25.60 0.25 -29.37 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 9 C 0.02 0.96 5.47 84.65 0.46 1.43 16 10 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 11 Si 0.94 41.97 27.47 68.60 1.88 43.85 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 13 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 14 H -0.24 -9.28 6.54 99.48 0.65 -8.63 16 15 C 0.35 13.67 6.51 178.86 1.16 14.84 16 16 N -0.62 -25.98 10.10 -212.83 -2.15 -28.13 16 17 C 0.28 9.98 12.33 181.52 2.24 12.22 16 18 N -0.54 -19.14 12.20 -70.97 -0.87 -20.00 16 19 S 0.18 5.74 19.60 -56.49 -1.11 4.63 16 20 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 21 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.07 1.44 7.25 -2.39 -0.02 1.42 16 25 H 0.03 0.79 5.80 -2.39 -0.01 0.78 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 2.85 8.07 -2.39 -0.02 2.83 16 28 H 0.08 2.25 7.23 -2.39 -0.02 2.23 16 29 H 0.06 2.33 7.13 -2.39 -0.02 2.31 16 30 H 0.03 1.53 7.15 -2.39 -0.02 1.52 16 31 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.24 6.32 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -67.68 277.91 3.49 -64.19 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.05 Total: 8.26 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.11 Total: 6.83 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.44 Total: -127.76 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.85 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.11 Total: 4.63 kcal Total: -67.68 3.49 -64.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083651352.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.624 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds