Wall clock time and date at job start Mon Mar 30 2020 03:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 S 1.81406 * 109.47054 * 179.97438 * 3 2 1 5 5 C 1.76195 * 102.99999 * 180.02562 * 4 3 2 6 6 C 1.39999 * 126.10704 * 0.02562 * 5 4 3 7 7 N 1.30958 * 108.45233 * 180.02562 * 6 5 4 8 8 N 1.40063 * 108.48454 * 0.02562 * 7 6 5 9 9 C 1.46491 * 126.07681 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46957 * 90.02371 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.36084 * 107.84651 * 0.26267 * 8 7 6 19 19 N 1.39691 * 126.28062 * 179.73418 * 18 8 7 20 20 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47026 * 300.00566 * 1 2 3 22 22 H 1.09001 * 109.46866 * 59.99886 * 1 2 3 23 23 H 1.09001 * 109.47026 * 239.99434 * 2 1 3 24 24 H 1.09001 * 109.46866 * 120.00113 * 2 1 3 25 25 H 1.09001 * 109.46952 * 60.00229 * 3 2 1 26 26 H 1.09001 * 109.47253 * 299.99877 * 3 2 1 27 27 H 1.08005 * 125.77061 * 0.02562 * 6 5 4 28 28 H 1.09004 * 109.47166 * 330.02637 * 9 8 7 29 29 H 1.08994 * 109.47507 * 210.02343 * 9 8 7 30 30 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 31 31 H 0.96999 * 120.00837 * 0.02562 * 19 18 8 32 32 H 0.97001 * 119.99593 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4424 0.0008 5 6 4.2505 3.1591 0.0014 6 6 3.3341 4.2175 0.0019 7 7 4.0018 5.3440 0.0018 8 7 5.3710 5.0487 0.0007 9 6 6.4639 6.0242 -0.0004 10 6 6.8402 6.3584 1.4201 11 1 6.3178 5.8905 2.2415 12 6 7.8557 7.2567 1.6712 13 7 8.1877 7.5442 2.9108 14 14 8.7596 8.0653 0.2505 15 1 8.0707 9.3275 -0.1202 16 1 10.1558 8.3648 0.6586 17 1 8.7712 7.1465 -0.9160 18 6 5.5055 3.6945 -0.0058 19 7 6.7078 2.9833 -0.0142 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 2.2583 4.1211 0.0022 28 1 6.1417 6.9302 -0.5136 29 1 7.3270 5.6023 -0.5152 30 1 8.9018 8.1764 3.0874 31 1 7.5530 3.4593 -0.0155 32 1 6.6975 2.0134 -0.0180 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087196227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:13 Heat of formation + Delta-G solvation = 61.722982 kcal Electronic energy + Delta-G solvation = -14700.555098 eV Core-core repulsion = 12209.504215 eV Total energy + Delta-G solvation = -2491.050883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32829 -34.79489 -34.08492 -33.52211 -31.66904 -27.95782 -27.71368 -27.11007 -23.07872 -21.68662 -20.78353 -19.66947 -17.16544 -17.03891 -16.35920 -15.44216 -15.29695 -14.70953 -14.53384 -14.03190 -13.61042 -13.33236 -12.84958 -12.71393 -12.53048 -12.18776 -11.58514 -11.35738 -11.10350 -10.95789 -10.83198 -10.55119 -10.48938 -10.38251 -9.76052 -9.52383 -8.85589 -8.81598 -7.74798 -6.39369 -6.29733 -4.33439 2.02143 2.77868 2.90489 3.12347 3.17873 3.20712 3.33002 3.44663 4.17569 4.36000 4.75518 4.81599 4.98090 5.14756 5.35377 5.40999 5.57530 5.59374 5.82409 5.85893 5.95544 6.03437 6.09002 6.38053 6.56213 7.05409 7.23856 7.29635 7.89380 8.05725 8.31008 8.58411 8.76551 9.25167 10.82698 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.053692 B = 0.004980 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.367727 B = 5620.973355 C = 5737.239435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.096 4.096 4 S -0.121 6.121 5 C -0.333 4.333 6 C 0.058 3.942 7 N -0.288 5.288 8 N -0.354 5.354 9 C 0.235 3.765 10 C -0.543 4.543 11 H 0.081 0.919 12 C 0.079 3.921 13 N -0.885 5.885 14 Si 0.875 3.125 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.401 3.599 19 N -0.849 5.849 20 H 0.057 0.943 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.169 0.831 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.269 0.731 31 H 0.405 0.595 32 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.632 -13.121 -7.562 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.245 4.245 4 S 0.112 5.888 5 C -0.460 4.460 6 C -0.132 4.132 7 N -0.109 5.109 8 N -0.142 5.142 9 C 0.116 3.884 10 C -0.581 4.581 11 H 0.099 0.901 12 C -0.126 4.126 13 N -0.522 5.522 14 Si 0.701 3.299 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.190 1.190 18 C 0.166 3.834 19 N -0.399 5.399 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.186 0.814 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.234 0.766 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -7.834 -12.447 -7.438 16.481 hybrid contribution 0.187 0.750 -0.459 0.899 sum -7.647 -11.697 -7.897 16.052 Atomic orbital electron populations 1.21761 0.94934 1.01818 1.02125 1.21244 0.95917 0.94371 1.03106 1.23450 0.95029 1.00888 1.05111 1.84302 1.05485 1.02577 1.96425 1.20263 0.93401 0.96737 1.35631 1.23175 0.98801 0.89235 1.02020 1.77361 0.86223 1.21821 1.25532 1.48911 1.05420 1.02392 1.57470 1.19898 0.81741 0.87248 0.99563 1.21208 1.19357 1.27136 0.90448 0.90115 1.24828 0.96253 0.95667 0.95807 1.69875 1.29757 1.33857 1.18681 0.86882 0.79737 0.80766 0.82526 1.19548 1.20538 1.19023 1.17490 0.86881 0.83640 0.95341 1.41580 1.03887 1.08316 1.86084 0.92386 0.92471 0.92548 0.91189 0.91108 0.90006 0.90105 0.81416 0.93399 0.94106 0.92085 0.76558 0.76010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.74 16 2 C -0.11 -0.98 5.94 -26.73 -0.16 -1.14 16 3 C -0.10 -1.10 4.83 37.16 0.18 -0.92 16 4 S -0.12 -1.78 21.74 -107.50 -2.34 -4.11 16 5 C -0.33 -6.23 6.33 -39.57 -0.25 -6.48 16 6 C 0.06 1.10 11.29 -17.26 -0.20 0.90 16 7 N -0.29 -6.52 12.56 30.67 0.39 -6.13 16 8 N -0.35 -8.13 3.63 -61.22 -0.22 -8.35 16 9 C 0.24 5.63 5.10 -5.20 -0.03 5.60 16 10 C -0.54 -15.18 9.94 -34.44 -0.34 -15.52 16 11 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 12 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 13 N -0.88 -26.23 13.96 55.43 0.77 -25.46 16 14 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.27 -5.68 6.54 56.52 0.37 -5.31 16 18 C 0.40 8.14 8.01 -152.09 -1.22 6.92 16 19 N -0.85 -14.19 9.13 31.41 0.29 -13.91 16 20 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 21 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 27 H 0.17 2.56 7.51 -52.48 -0.39 2.16 16 28 H 0.05 1.15 7.58 -51.93 -0.39 0.76 16 29 H 0.04 0.91 6.57 -51.93 -0.34 0.56 16 30 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.40 6.57 8.14 -40.82 -0.33 6.23 16 32 H 0.41 5.76 8.57 -40.82 -0.35 5.41 16 LS Contribution 287.79 15.07 4.34 4.34 Total: -1.00 -31.33 287.79 -7.55 -38.87 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.36 Total: 8.67 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.74 Total: -9.29 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 1.22 Total: -53.85 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.34 Total: -4.11 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.33 -7.55 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087196227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.597 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds