Wall clock time and date at job start Mon Mar 30 2020 03:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47302 * 2 1 4 4 S 1.81406 * 109.47054 * 179.97438 * 3 2 1 5 5 C 1.76195 * 102.99999 * 180.02562 * 4 3 2 6 6 C 1.39999 * 126.10704 * 0.02562 * 5 4 3 7 7 N 1.30958 * 108.45233 * 180.02562 * 6 5 4 8 8 N 1.40063 * 108.48454 * 0.02562 * 7 6 5 9 9 C 1.46491 * 126.07681 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.46957 * 90.02371 * 9 8 7 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 9 8 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 9 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 9 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.36084 * 107.84651 * 0.26267 * 8 7 6 19 19 N 1.39691 * 126.28062 * 179.73418 * 18 8 7 20 20 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47026 * 300.00566 * 1 2 3 22 22 H 1.09001 * 109.46866 * 59.99886 * 1 2 3 23 23 H 1.09001 * 109.47026 * 239.99434 * 2 1 3 24 24 H 1.09001 * 109.46866 * 120.00113 * 2 1 3 25 25 H 1.09001 * 109.46952 * 60.00229 * 3 2 1 26 26 H 1.09001 * 109.47253 * 299.99877 * 3 2 1 27 27 H 1.08005 * 125.77061 * 0.02562 * 6 5 4 28 28 H 1.09004 * 109.47166 * 330.02637 * 9 8 7 29 29 H 1.08994 * 109.47507 * 210.02343 * 9 8 7 30 30 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 31 31 H 0.96999 * 120.00837 * 0.02562 * 19 18 8 32 32 H 0.97001 * 119.99593 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4424 0.0008 5 6 4.2505 3.1591 0.0014 6 6 3.3341 4.2175 0.0019 7 7 4.0018 5.3440 0.0018 8 7 5.3710 5.0487 0.0007 9 6 6.4639 6.0242 -0.0004 10 6 6.8402 6.3584 1.4201 11 1 6.3178 5.8905 2.2415 12 6 7.8557 7.2567 1.6712 13 7 8.1877 7.5442 2.9108 14 14 8.7596 8.0653 0.2505 15 1 8.0707 9.3275 -0.1202 16 1 10.1558 8.3648 0.6586 17 1 8.7712 7.1465 -0.9160 18 6 5.5055 3.6945 -0.0058 19 7 6.7078 2.9833 -0.0142 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6768 1.9563 -0.8900 27 1 2.2583 4.1211 0.0022 28 1 6.1417 6.9302 -0.5136 29 1 7.3270 5.6023 -0.5152 30 1 8.9018 8.1764 3.0874 31 1 7.5530 3.4593 -0.0155 32 1 6.6975 2.0134 -0.0180 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087196227.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:13 Heat of formation + Delta-G solvation = 40.958480 kcal Electronic energy + Delta-G solvation = -14701.455514 eV Core-core repulsion = 12209.504215 eV Total energy + Delta-G solvation = -2491.951300 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 241.094 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.88657 -35.85106 -35.50937 -35.22299 -33.55722 -29.58279 -29.32549 -28.03724 -24.92547 -22.58903 -22.30366 -21.19982 -19.25754 -18.58848 -17.69211 -16.63835 -16.54493 -16.24091 -15.95255 -15.57878 -15.01713 -14.48542 -14.33199 -14.23475 -13.77377 -13.49372 -13.15296 -12.68824 -12.43221 -12.19399 -12.01737 -11.99567 -11.85399 -11.84378 -11.65244 -10.93413 -10.81796 -10.34239 -9.28685 -8.43252 -7.69769 -6.54900 0.85654 1.20940 1.32092 1.35503 1.43915 1.55833 1.85127 2.01780 2.23667 2.87193 2.94022 3.89312 3.99232 4.04564 4.27092 4.45401 4.50828 4.55486 4.63878 4.78086 4.85449 4.94601 5.19542 5.21129 5.27708 5.45421 5.55526 5.72463 6.07591 6.46678 6.52887 6.65984 7.09381 7.10949 8.73511 Molecular weight = 241.09amu Principal moments of inertia in cm(-1) A = 0.053692 B = 0.004980 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.367727 B = 5620.973355 C = 5737.239435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.092 4.092 4 S -0.117 6.117 5 C -0.340 4.340 6 C 0.066 3.934 7 N -0.334 5.334 8 N -0.379 5.379 9 C 0.244 3.756 10 C -0.552 4.552 11 H 0.021 0.979 12 C 0.021 3.979 13 N -0.936 5.936 14 Si 0.954 3.046 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.236 1.236 18 C 0.384 3.616 19 N -0.837 5.837 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.203 0.797 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.274 0.726 31 H 0.407 0.593 32 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 -14.242 -9.521 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.240 4.240 4 S 0.116 5.884 5 C -0.467 4.467 6 C -0.124 4.124 7 N -0.156 5.156 8 N -0.168 5.168 9 C 0.124 3.876 10 C -0.590 4.590 11 H 0.040 0.960 12 C -0.178 4.178 13 N -0.575 5.575 14 Si 0.775 3.225 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.150 3.850 19 N -0.388 5.388 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.108 0.892 27 H 0.220 0.780 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.237 0.763 32 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.267 -13.622 -9.404 18.503 hybrid contribution 0.179 0.958 0.250 1.006 sum -8.089 -12.665 -9.154 17.596 Atomic orbital electron populations 1.21743 0.93378 1.02781 1.02412 1.21250 0.97069 0.92664 1.03274 1.23622 0.92105 1.02704 1.05586 1.84281 1.08801 0.99154 1.96210 1.20695 0.92796 0.99048 1.34209 1.23794 1.00349 0.88494 0.99713 1.77282 0.86486 1.23861 1.27974 1.48789 1.05364 1.03186 1.59460 1.19648 0.83068 0.88093 0.96796 1.21268 1.19270 1.27275 0.91191 0.96011 1.25858 0.96973 0.95945 0.99073 1.70037 1.30817 1.34954 1.21648 0.85640 0.77945 0.79831 0.79093 1.19121 1.19861 1.15854 1.17939 0.88567 0.83092 0.95412 1.41561 1.03028 1.08893 1.85283 0.91132 0.92411 0.92067 0.90787 0.91227 0.89919 0.89231 0.78047 0.93366 0.91737 0.91696 0.76276 0.74520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.10 -1.62 5.94 30.59 0.18 -1.44 16 3 C -0.09 -1.87 4.83 71.98 0.35 -1.52 16 4 S -0.12 -3.25 21.74 -56.49 -1.23 -4.47 16 5 C -0.34 -12.42 6.33 22.28 0.14 -12.28 16 6 C 0.07 2.45 11.29 85.25 0.96 3.41 16 7 N -0.33 -15.22 12.56 -56.87 -0.71 -15.94 16 8 N -0.38 -17.55 3.63 -347.59 -1.26 -18.81 16 9 C 0.24 11.69 5.10 85.64 0.44 12.12 16 10 C -0.55 -31.81 9.94 25.60 0.25 -31.55 16 11 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 12 C 0.02 1.20 5.47 84.66 0.46 1.67 16 13 N -0.94 -57.11 13.96 21.45 0.30 -56.81 16 14 Si 0.95 40.88 27.47 68.60 1.88 42.76 16 15 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.24 -8.89 6.54 99.48 0.65 -8.24 16 18 C 0.38 15.46 8.01 131.06 1.05 16.51 16 19 N -0.84 -27.32 9.13 -54.54 -0.50 -27.82 16 20 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 21 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 22 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 23 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 27 H 0.20 5.74 7.51 -2.91 -0.02 5.72 16 28 H 0.05 2.28 7.58 -2.38 -0.02 2.26 16 29 H 0.06 2.75 6.57 -2.39 -0.02 2.73 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.41 12.88 8.14 -92.71 -0.75 12.12 16 32 H 0.42 11.38 8.57 -92.71 -0.79 10.59 16 Total: -1.00 -70.12 287.79 2.56 -67.56 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.47 Total: 27.63 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.55 Total: -14.10 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -2.17 Total: -119.38 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.88 Total: 42.76 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.23 Total: -4.47 kcal Total: -70.12 2.56 -67.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087196227.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.516 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds