Wall clock time and date at job start Mon Mar 30 2020 04:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34222 * 117.00335 * 2 1 4 4 O 1.20831 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00085 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.88826 * 273.95117 * 5 3 2 7 7 C 1.55127 * 110.93657 * 38.03384 * 5 3 2 8 8 N 1.47429 * 104.71961 * 155.28579 * 7 5 3 9 9 C 1.34785 * 125.64406 * 155.81412 * 8 7 5 10 10 O 1.21688 * 119.99319 * 179.69195 * 9 8 7 11 11 C 1.46371 * 120.00222 * 359.96926 * 9 8 7 12 12 H 1.08006 * 119.99803 * 359.72385 * 11 9 8 13 13 C 1.40044 * 120.00087 * 179.72070 * 11 9 8 14 14 N 1.30671 * 119.99940 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99977 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46985 * 90.00358 * 15 13 11 17 17 H 1.48503 * 109.47079 * 210.00215 * 15 13 11 18 18 H 1.48494 * 109.47327 * 330.00524 * 15 13 11 19 19 C 1.47018 * 108.70418 * 335.55190 * 8 7 5 20 20 C 1.54320 * 107.27289 * 1.28886 * 19 8 7 21 21 H 1.08992 * 110.72417 * 140.73509 * 20 19 8 22 22 C 1.53000 * 110.71721 * 263.83038 * 20 19 8 23 23 H 1.08998 * 109.47573 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47356 * 299.99804 * 1 2 3 25 25 H 1.09007 * 109.47423 * 59.99696 * 1 2 3 26 26 H 1.09001 * 110.49849 * 36.44585 * 7 5 3 27 27 H 1.09000 * 110.34469 * 274.04914 * 7 5 3 28 28 H 0.97000 * 120.00099 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.88296 * 120.70424 * 19 8 7 30 30 H 1.08999 * 109.88348 * 241.86854 * 19 8 7 31 31 H 1.08998 * 109.47713 * 67.59425 * 22 20 19 32 32 H 1.09003 * 109.46918 * 187.59319 * 22 20 19 33 33 H 1.08999 * 109.47101 * 307.59104 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9577 1.2251 1.0167 7 6 4.1799 0.1639 -0.8916 8 7 5.4980 0.6897 -1.2912 9 6 6.5594 -0.0523 -1.6645 10 8 7.6011 0.4917 -1.9805 11 6 6.4573 -1.5121 -1.6958 12 1 5.5327 -1.9949 -1.4153 13 6 7.5583 -2.2829 -2.0893 14 7 8.6770 -1.6989 -2.4282 15 14 7.4281 -4.1460 -2.1285 16 1 6.9591 -4.5814 -3.4686 17 1 8.7604 -4.7412 -1.8528 18 1 6.4612 -4.5965 -1.0954 19 6 5.4610 2.1578 -1.2209 20 6 4.0563 2.5573 -0.7221 21 1 4.1175 3.3951 -0.0276 22 6 3.1407 2.8986 -1.8994 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 3.5577 -0.0073 -1.7700 27 1 4.2961 -0.7584 -0.3224 28 1 9.4397 -2.2327 -2.7005 29 1 6.2178 2.5147 -0.5223 30 1 5.6374 2.5808 -2.2098 31 1 2.9401 1.9964 -2.4772 32 1 2.2019 3.3055 -1.5235 33 1 3.6276 3.6371 -2.5362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095017806.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:59 Heat of formation + Delta-G solvation = -145.029258 kcal Electronic energy + Delta-G solvation = -17787.781501 eV Core-core repulsion = 14812.719545 eV Total energy + Delta-G solvation = -2975.061955 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.88428 -40.07885 -38.08266 -37.29959 -34.66681 -33.27797 -31.32163 -28.93784 -28.29335 -27.01705 -24.98641 -22.87986 -21.34231 -20.48959 -18.61559 -18.40016 -17.96930 -17.65871 -17.14570 -16.56913 -15.78686 -15.54658 -15.00477 -14.88387 -14.36830 -14.09121 -13.97624 -13.46305 -13.31695 -13.11050 -13.00200 -12.83343 -12.71596 -12.56411 -12.18869 -12.00399 -11.85633 -11.72877 -11.67641 -11.27430 -10.93133 -9.90334 -9.16826 -8.30312 -6.85755 1.11966 1.41491 1.42754 1.58507 1.73173 2.24424 2.44217 2.81466 3.21226 3.50865 3.60570 3.84276 4.03646 4.23962 4.25136 4.35898 4.40524 4.48521 4.72067 4.76766 4.78431 4.87188 4.96390 4.98643 5.10323 5.25761 5.33542 5.45667 5.56651 6.02394 6.37720 6.71485 6.86419 7.41990 8.43279 8.65835 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.027708 B = 0.007069 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.285524 B = 3960.175563 C = 4812.743344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.488 3.512 4 O -0.519 6.519 5 C -0.091 4.091 6 H 0.140 0.860 7 C 0.134 3.866 8 N -0.651 5.651 9 C 0.553 3.447 10 O -0.630 6.630 11 C -0.563 4.563 12 H 0.091 0.909 13 C 0.029 3.971 14 N -0.822 5.822 15 Si 0.997 3.003 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.245 1.245 19 C 0.115 3.885 20 C -0.070 4.070 21 H 0.116 0.884 22 C -0.147 4.147 23 H 0.128 0.872 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.275 0.725 29 H 0.047 0.953 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 1.365 5.473 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.331 3.669 4 O -0.408 6.408 5 C -0.110 4.110 6 H 0.158 0.842 7 C 0.010 3.990 8 N -0.389 5.389 9 C 0.360 3.640 10 O -0.518 6.518 11 C -0.599 4.599 12 H 0.109 0.891 13 C -0.187 4.187 14 N -0.452 5.452 15 Si 0.816 3.184 16 H -0.186 1.186 17 H -0.198 1.198 18 H -0.168 1.168 19 C -0.008 4.008 20 C -0.089 4.089 21 H 0.134 0.866 22 C -0.204 4.204 23 H 0.146 0.854 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.493 1.903 5.216 16.458 hybrid contribution 0.236 -0.448 -0.235 0.559 sum -15.258 1.454 4.981 16.116 Atomic orbital electron populations 1.23573 0.74608 1.05674 1.02715 1.86559 1.25167 1.32666 1.83371 1.23174 0.90957 0.81423 0.71324 1.90598 1.67253 1.36679 1.46281 1.22401 0.87368 0.97883 1.03391 0.84236 1.21925 0.83811 0.96328 0.96912 1.48502 1.12610 1.05508 1.72306 1.18429 0.80621 0.88424 0.76525 1.90561 1.30920 1.74610 1.55675 1.21413 1.00605 0.89483 1.48437 0.89135 1.27008 0.93595 1.06571 0.91485 1.70191 1.02924 1.39366 1.32678 0.85034 0.78832 0.74549 0.80023 1.18648 1.19765 1.16844 1.21827 0.96706 0.82653 0.99616 1.22060 0.92502 0.96303 0.98020 0.86629 1.21987 1.00195 1.01388 0.96841 0.85402 0.91393 0.91882 0.92474 0.90068 0.91494 0.93467 0.93906 0.94082 0.90069 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.67 10.12 -51.34 -0.52 -9.19 16 3 C 0.49 12.84 6.56 71.24 0.47 13.31 16 4 O -0.52 -14.74 13.93 21.95 0.31 -14.43 16 5 C -0.09 -2.54 3.44 -10.07 -0.03 -2.58 16 6 H 0.14 3.43 8.14 -2.39 -0.02 3.41 16 7 C 0.13 4.78 5.31 86.93 0.46 5.24 16 8 N -0.65 -30.05 3.33 -816.43 -2.71 -32.77 16 9 C 0.55 32.65 7.78 86.36 0.67 33.32 16 10 O -0.63 -43.15 15.35 -4.31 -0.07 -43.21 16 11 C -0.56 -31.86 8.99 24.83 0.22 -31.64 16 12 H 0.09 4.58 6.64 -2.91 -0.02 4.56 16 13 C 0.03 1.59 5.50 85.30 0.47 2.06 16 14 N -0.82 -50.45 11.83 21.83 0.26 -50.20 16 15 Si 1.00 40.51 29.56 68.60 2.03 42.54 16 16 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 17 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 18 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 19 C 0.12 4.47 6.45 86.73 0.56 5.03 16 20 C -0.07 -2.00 3.25 -9.60 -0.03 -2.03 16 21 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 22 C -0.15 -4.00 8.10 71.98 0.58 -3.41 16 23 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.02 8.13 -2.39 -0.02 1.00 16 25 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.06 2.01 7.49 -2.39 -0.02 1.99 16 27 H 0.08 2.90 7.14 -2.39 -0.02 2.89 16 28 H 0.28 15.25 8.29 -92.71 -0.77 14.48 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.75 7.76 -2.39 -0.02 1.73 16 31 H 0.04 1.20 7.21 -2.39 -0.02 1.18 16 32 H 0.08 2.13 6.04 -2.39 -0.01 2.12 16 33 H 0.07 1.71 8.03 -2.39 -0.02 1.69 16 Total: -1.00 -77.22 278.80 4.97 -72.25 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.11 Total: 14.07 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 4.57 Total: 20.95 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.46 Total: -82.96 kcal Atomic # 8 Polarization: -66.56 SS G_CDS: -0.28 Total: -66.84 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -77.22 4.97 -72.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095017806.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.783 kcal (2) G-P(sol) polarization free energy of solvation -77.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds