Wall clock time and date at job start Mon Mar 30 2020 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99611 * 2 1 4 4 O 1.20830 * 119.99894 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99978 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.80094 * 303.29659 * 5 3 2 7 7 C 1.54938 * 110.73776 * 66.58212 * 5 3 2 8 8 N 1.48113 * 103.25768 * 155.71394 * 7 5 3 9 9 C 1.34780 * 127.03756 * 140.74129 * 8 7 5 10 10 O 1.21689 * 120.00030 * 179.97438 * 9 8 7 11 11 C 1.46376 * 119.99836 * 359.96203 * 9 8 7 12 12 H 1.08003 * 119.99662 * 353.99182 * 11 9 8 13 13 C 1.40042 * 120.00023 * 173.99444 * 11 9 8 14 14 N 1.30670 * 120.00185 * 6.18120 * 13 11 9 15 15 Si 1.86796 * 120.00121 * 186.19105 * 13 11 9 16 16 H 1.48500 * 109.47632 * 94.97861 * 15 13 11 17 17 H 1.48502 * 109.47154 * 214.98118 * 15 13 11 18 18 H 1.48502 * 109.46787 * 334.97747 * 15 13 11 19 19 C 1.47487 * 105.93267 * 320.71247 * 8 7 5 20 20 C 1.54008 * 107.08337 * 25.44234 * 19 8 7 21 21 H 1.09001 * 110.32848 * 239.70349 * 20 19 8 22 22 C 1.52995 * 110.32579 * 117.58915 * 20 19 8 23 23 H 1.08993 * 109.47233 * 59.99906 * 1 2 3 24 24 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47317 * 299.99489 * 1 2 3 26 26 H 1.09005 * 110.66422 * 37.27429 * 7 5 3 27 27 H 1.08999 * 110.66427 * 274.15749 * 7 5 3 28 28 H 0.97000 * 120.00499 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.91159 * 266.08400 * 19 8 7 30 30 H 1.08996 * 109.91611 * 144.80414 * 19 8 7 31 31 H 1.09004 * 109.47463 * 61.45726 * 22 20 19 32 32 H 1.08998 * 109.47646 * 301.45461 * 22 20 19 33 33 H 1.09003 * 109.46953 * 181.45359 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9818 0.7369 0.8526 7 6 4.1449 0.7284 -1.3287 8 7 5.4607 1.4010 -1.4285 9 6 6.6163 0.8631 -1.8664 10 8 7.6289 1.5373 -1.8951 11 6 6.6533 -0.5322 -2.3072 12 1 5.7810 -1.1584 -2.1913 13 6 7.8197 -1.0552 -2.8792 14 7 8.9111 -0.3372 -2.9097 15 14 7.8155 -2.7790 -3.5987 16 1 7.5560 -2.7053 -5.0590 17 1 9.1352 -3.4174 -3.3620 18 1 6.7518 -3.5847 -2.9469 19 6 5.2476 2.7802 -0.9513 20 6 4.0373 2.7477 0.0005 21 1 3.2464 3.3998 -0.3701 22 6 4.4576 3.1713 1.4093 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.5070 1.0048 -2.1683 27 1 4.2687 -0.3533 -1.2783 28 1 9.7191 -0.6995 -3.3055 29 1 5.0382 3.4370 -1.7957 30 1 6.1311 3.1288 -0.4166 31 1 4.8354 4.1935 1.3839 32 1 5.2395 2.5039 1.7714 33 1 3.5972 3.1185 2.0764 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095017807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:00 Heat of formation + Delta-G solvation = -123.741347 kcal Electronic energy + Delta-G solvation = -17645.161322 eV Core-core repulsion = 14671.022480 eV Total energy + Delta-G solvation = -2974.138842 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62132 -38.46959 -36.53888 -35.72925 -32.57147 -31.84140 -30.07644 -27.44886 -27.06190 -25.07228 -23.52381 -21.43765 -19.79361 -18.97730 -17.66288 -16.95807 -16.35278 -16.25852 -15.60028 -14.69488 -14.29697 -13.87830 -13.64866 -13.21482 -13.09401 -12.78050 -12.51955 -12.27567 -11.98703 -11.65571 -11.44852 -11.13930 -10.96284 -10.82208 -10.73989 -10.66799 -10.48275 -10.32927 -10.22265 -10.11651 -8.88665 -7.70001 -7.35028 -6.25199 -4.68838 2.25375 2.74383 3.12161 3.19466 3.22900 4.04954 4.47652 4.50253 4.63611 4.94467 4.98937 5.03691 5.11026 5.25258 5.45926 5.52837 5.62380 5.71510 5.77441 5.97295 6.14769 6.23139 6.26800 6.34277 6.43653 6.49786 6.60796 7.20291 7.40678 7.79733 8.04717 8.35548 8.97705 9.42035 10.51811 10.70509 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.007017 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.593559 B = 3989.439107 C = 4899.380094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.477 3.523 4 O -0.510 6.510 5 C -0.100 4.100 6 H 0.117 0.883 7 C 0.133 3.867 8 N -0.643 5.643 9 C 0.575 3.425 10 O -0.573 6.573 11 C -0.540 4.540 12 H 0.072 0.928 13 C 0.087 3.913 14 N -0.767 5.767 15 Si 0.909 3.091 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.263 1.263 19 C 0.115 3.885 20 C -0.094 4.094 21 H 0.094 0.906 22 C -0.140 4.140 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.269 0.731 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 -0.268 5.748 14.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.319 3.681 4 O -0.398 6.398 5 C -0.120 4.120 6 H 0.135 0.865 7 C 0.007 3.993 8 N -0.383 5.383 9 C 0.382 3.618 10 O -0.455 6.455 11 C -0.577 4.577 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.395 5.395 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.187 1.187 19 C -0.010 4.010 20 C -0.114 4.114 21 H 0.112 0.888 22 C -0.197 4.197 23 H 0.080 0.920 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.110 0.890 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.864 0.375 5.631 14.048 hybrid contribution -0.413 -0.781 -0.322 0.940 sum -13.278 -0.406 5.309 14.306 Atomic orbital electron populations 1.23244 0.76809 1.03550 1.02333 1.86567 1.23049 1.33527 1.83965 1.23679 0.91851 0.81099 0.71423 1.90620 1.67099 1.36402 1.45679 1.22425 0.86240 1.00007 1.03350 0.86475 1.21968 0.86170 0.99152 0.91969 1.49099 1.08455 1.10222 1.70529 1.18065 0.79050 0.88036 0.76642 1.90622 1.32120 1.63750 1.58958 1.20880 0.99396 0.94472 1.42913 0.91024 1.25723 0.94656 0.98674 0.94212 1.70020 1.00391 1.36235 1.32901 0.86339 0.78341 0.82319 0.79698 1.19750 1.20395 1.18742 1.21750 0.96249 0.87259 0.95708 1.22130 0.98532 0.93629 0.97072 0.88797 1.21823 1.01017 1.01686 0.95204 0.91957 0.88197 0.92138 0.92776 0.88983 0.91981 0.93455 0.91172 0.92123 0.92152 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.72 10.57 -39.27 -0.41 -5.14 16 3 C 0.48 7.07 7.26 36.01 0.26 7.33 16 4 O -0.51 -8.36 15.19 -18.75 -0.28 -8.65 16 5 C -0.10 -1.55 3.11 -89.90 -0.28 -1.83 16 6 H 0.12 1.71 7.86 -51.93 -0.41 1.30 16 7 C 0.13 2.43 6.35 -2.13 -0.01 2.41 16 8 N -0.64 -14.68 3.29 -171.42 -0.56 -15.25 16 9 C 0.57 16.40 7.82 -12.98 -0.10 16.29 16 10 O -0.57 -18.63 15.38 5.20 0.08 -18.55 16 11 C -0.54 -15.02 9.05 -35.63 -0.32 -15.34 16 12 H 0.07 1.82 6.42 -52.48 -0.34 1.48 16 13 C 0.09 2.40 5.49 -17.37 -0.10 2.31 16 14 N -0.77 -22.77 11.85 55.55 0.66 -22.11 16 15 Si 0.91 19.82 29.56 -169.99 -5.03 14.80 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 19 C 0.11 2.22 6.62 -2.98 -0.02 2.20 16 20 C -0.09 -1.47 3.00 -89.25 -0.27 -1.74 16 21 H 0.09 1.46 6.86 -51.93 -0.36 1.10 16 22 C -0.14 -1.89 8.89 37.15 0.33 -1.56 16 23 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 24 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 27 H 0.09 1.68 6.60 -51.93 -0.34 1.34 16 28 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.44 7.59 -51.93 -0.39 1.04 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 283.95 15.07 4.28 4.28 Total: -1.00 -34.49 283.95 -5.06 -39.55 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -4.35 Total: -0.41 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 0.56 Total: 11.48 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.09 Total: -37.36 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.62 Total: -32.34 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.49 -5.06 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095017807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.193 kcal (2) G-P(sol) polarization free energy of solvation -34.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds