Wall clock time and date at job start Mon Mar 30 2020 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99611 * 2 1 4 4 O 1.20830 * 119.99894 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99978 * 179.97438 * 3 2 1 6 6 H 1.09003 * 110.80094 * 303.29659 * 5 3 2 7 7 C 1.54938 * 110.73776 * 66.58212 * 5 3 2 8 8 N 1.48113 * 103.25768 * 155.71394 * 7 5 3 9 9 C 1.34780 * 127.03756 * 140.74129 * 8 7 5 10 10 O 1.21689 * 120.00030 * 179.97438 * 9 8 7 11 11 C 1.46376 * 119.99836 * 359.96203 * 9 8 7 12 12 H 1.08003 * 119.99662 * 353.99182 * 11 9 8 13 13 C 1.40042 * 120.00023 * 173.99444 * 11 9 8 14 14 N 1.30670 * 120.00185 * 6.18120 * 13 11 9 15 15 Si 1.86796 * 120.00121 * 186.19105 * 13 11 9 16 16 H 1.48500 * 109.47632 * 94.97861 * 15 13 11 17 17 H 1.48502 * 109.47154 * 214.98118 * 15 13 11 18 18 H 1.48502 * 109.46787 * 334.97747 * 15 13 11 19 19 C 1.47487 * 105.93267 * 320.71247 * 8 7 5 20 20 C 1.54008 * 107.08337 * 25.44234 * 19 8 7 21 21 H 1.09001 * 110.32848 * 239.70349 * 20 19 8 22 22 C 1.52995 * 110.32579 * 117.58915 * 20 19 8 23 23 H 1.08993 * 109.47233 * 59.99906 * 1 2 3 24 24 H 1.09004 * 109.46790 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47317 * 299.99489 * 1 2 3 26 26 H 1.09005 * 110.66422 * 37.27429 * 7 5 3 27 27 H 1.08999 * 110.66427 * 274.15749 * 7 5 3 28 28 H 0.97000 * 120.00499 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.91159 * 266.08400 * 19 8 7 30 30 H 1.08996 * 109.91611 * 144.80414 * 19 8 7 31 31 H 1.09004 * 109.47463 * 61.45726 * 22 20 19 32 32 H 1.08998 * 109.47646 * 301.45461 * 22 20 19 33 33 H 1.09003 * 109.46953 * 181.45359 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9818 0.7369 0.8526 7 6 4.1449 0.7284 -1.3287 8 7 5.4607 1.4010 -1.4285 9 6 6.6163 0.8631 -1.8664 10 8 7.6289 1.5373 -1.8951 11 6 6.6533 -0.5322 -2.3072 12 1 5.7810 -1.1584 -2.1913 13 6 7.8197 -1.0552 -2.8792 14 7 8.9111 -0.3372 -2.9097 15 14 7.8155 -2.7790 -3.5987 16 1 7.5560 -2.7053 -5.0590 17 1 9.1352 -3.4174 -3.3620 18 1 6.7518 -3.5847 -2.9469 19 6 5.2476 2.7802 -0.9513 20 6 4.0373 2.7477 0.0005 21 1 3.2464 3.3998 -0.3701 22 6 4.4576 3.1713 1.4093 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.5070 1.0048 -2.1683 27 1 4.2687 -0.3533 -1.2783 28 1 9.7191 -0.6995 -3.3055 29 1 5.0382 3.4370 -1.7957 30 1 6.1311 3.1288 -0.4166 31 1 4.8354 4.1935 1.3839 32 1 5.2395 2.5039 1.7714 33 1 3.5972 3.1185 2.0764 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095017807.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:00 Heat of formation + Delta-G solvation = -147.418436 kcal Electronic energy + Delta-G solvation = -17646.188037 eV Core-core repulsion = 14671.022480 eV Total energy + Delta-G solvation = -2975.165558 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 241.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.82112 -40.05797 -38.07759 -37.27832 -34.67204 -33.46133 -31.42872 -28.97592 -28.37756 -26.71744 -25.01339 -22.72610 -21.43839 -20.51595 -18.92534 -18.54262 -17.83111 -17.59504 -17.32071 -16.33918 -15.81283 -15.54050 -14.94302 -14.65497 -14.38865 -14.16290 -13.96160 -13.74932 -13.24662 -13.20221 -12.99612 -12.85819 -12.70037 -12.44985 -12.02714 -11.95537 -11.90638 -11.78007 -11.62620 -11.53604 -10.93528 -9.90937 -9.25162 -8.31796 -6.85893 1.07638 1.41881 1.42701 1.59093 1.68313 2.24052 2.43602 2.78754 3.32918 3.47987 3.62228 3.84399 4.05356 4.22535 4.28136 4.35001 4.38895 4.52532 4.70444 4.73652 4.75653 4.85968 4.89443 5.00161 5.11756 5.29307 5.34429 5.35468 5.53166 6.00402 6.36268 6.67969 6.86070 7.41768 8.41677 8.64857 Molecular weight = 241.11amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.007017 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.593559 B = 3989.439107 C = 4899.380094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.486 3.514 4 O -0.525 6.525 5 C -0.091 4.091 6 H 0.128 0.872 7 C 0.131 3.869 8 N -0.652 5.652 9 C 0.557 3.443 10 O -0.630 6.630 11 C -0.564 4.564 12 H 0.093 0.907 13 C 0.029 3.971 14 N -0.822 5.822 15 Si 0.997 3.003 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.244 1.244 19 C 0.111 3.889 20 C -0.082 4.082 21 H 0.101 0.899 22 C -0.135 4.135 23 H 0.062 0.938 24 H 0.131 0.869 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.275 0.725 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 -1.940 6.140 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.330 3.670 4 O -0.415 6.415 5 C -0.111 4.111 6 H 0.146 0.854 7 C 0.007 3.993 8 N -0.389 5.389 9 C 0.365 3.635 10 O -0.517 6.517 11 C -0.600 4.600 12 H 0.111 0.889 13 C -0.186 4.186 14 N -0.451 5.451 15 Si 0.816 3.184 16 H -0.189 1.189 17 H -0.197 1.197 18 H -0.167 1.167 19 C -0.013 4.013 20 C -0.101 4.101 21 H 0.119 0.881 22 C -0.193 4.193 23 H 0.081 0.919 24 H 0.149 0.851 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.176 -1.296 6.051 16.389 hybrid contribution 0.184 -0.216 -0.426 0.511 sum -14.992 -1.512 5.625 16.084 Atomic orbital electron populations 1.23600 0.74503 1.05815 1.02719 1.86542 1.25247 1.32379 1.83397 1.23282 0.91228 0.81393 0.71131 1.90621 1.67285 1.37016 1.46535 1.22270 0.87282 0.99583 1.01988 0.85396 1.22104 0.84105 0.99028 0.94069 1.48835 1.08827 1.11941 1.69323 1.18428 0.79764 0.88650 0.76684 1.90565 1.34700 1.65050 1.61343 1.21394 1.00608 0.94785 1.43184 0.88948 1.27005 0.93681 1.03973 0.93952 1.70190 1.01560 1.39192 1.34171 0.85008 0.79036 0.75502 0.78815 1.18893 1.19732 1.16699 1.21918 0.97381 0.85560 0.96443 1.22028 0.96617 0.94114 0.97322 0.88105 1.21795 1.01533 1.02040 0.93904 0.91876 0.85092 0.91501 0.91798 0.88952 0.91458 0.93518 0.92982 0.91137 0.92972 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.62 16 2 O -0.36 -8.55 10.57 -51.45 -0.54 -9.10 16 3 C 0.49 13.22 7.26 71.24 0.52 13.74 16 4 O -0.53 -15.91 15.19 21.95 0.33 -15.57 16 5 C -0.09 -2.66 3.11 -10.33 -0.03 -2.69 16 6 H 0.13 3.48 7.86 -2.39 -0.02 3.46 16 7 C 0.13 4.66 6.35 86.73 0.55 5.21 16 8 N -0.65 -30.20 3.29 -814.46 -2.68 -32.88 16 9 C 0.56 32.79 7.82 86.36 0.67 33.46 16 10 O -0.63 -42.97 15.38 -4.31 -0.07 -43.03 16 11 C -0.56 -31.63 9.05 24.83 0.22 -31.41 16 12 H 0.09 4.61 6.42 -2.91 -0.02 4.59 16 13 C 0.03 1.61 5.49 85.30 0.47 2.08 16 14 N -0.82 -50.19 11.85 21.83 0.26 -49.93 16 15 Si 1.00 40.25 29.56 68.60 2.03 42.28 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 17 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.24 -9.00 7.11 99.48 0.71 -8.29 16 19 C 0.11 4.36 6.62 86.53 0.57 4.93 16 20 C -0.08 -2.44 3.00 -9.91 -0.03 -2.47 16 21 H 0.10 2.94 6.86 -2.39 -0.02 2.92 16 22 C -0.14 -3.43 8.89 71.98 0.64 -2.79 16 23 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 24 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.07 1.01 8.13 -2.38 -0.02 1.00 16 26 H 0.06 2.15 8.04 -2.38 -0.02 2.13 16 27 H 0.09 3.26 6.60 -2.39 -0.02 3.25 16 28 H 0.28 15.18 8.29 -92.71 -0.77 14.41 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 2.22 7.59 -2.39 -0.02 2.20 16 31 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.93 283.95 5.22 -71.71 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.11 Total: 14.84 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 4.78 Total: 21.69 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -2.42 Total: -82.81 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -0.28 Total: -67.70 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -76.93 5.22 -71.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095017807.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.713 kcal (2) G-P(sol) polarization free energy of solvation -76.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds